ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Allele Frequencies: Difference between revisions
Jump to navigation
Jump to search
(Created page with "==Allele Frequency estimation== -doMaf INT INT=1 bfgs known minor INT=2 EM known minor INT=4 BFGS unknown minor INT=8 EM unknown minor ===Phat estimator=== ===ML est...") |
No edit summary |
||
| Line 1: | Line 1: | ||
=Allele Frequency estimation= | |||
-doMaf | |||
; -doMaf [int] | |||
INT=1 bfgs known minor | INT=1 bfgs known minor | ||
| Line 10: | Line 11: | ||
INT=8 EM unknown minor | INT=8 EM unknown minor | ||
INT=16 frequencies from genotype probabilities | |||
== | ==Allele frequencies from genotype likelihoods== | ||
The allele frequency estimators are described in [suYeon|citation]. The | |||
===ML estimator with known minor=== | ===ML estimator with known minor=== | ||
===ML estimator with unknown minor=== | ===ML estimator with unknown minor=== | ||
==Estimator from genotype probabilities== | |||
==Estimator from sequencing data== | |||
Revision as of 11:13, 15 June 2012
Allele Frequency estimation
- -doMaf [int]
INT=1 bfgs known minor
INT=2 EM known minor
INT=4 BFGS unknown minor
INT=8 EM unknown minor
INT=16 frequencies from genotype probabilities
Allele frequencies from genotype likelihoods
The allele frequency estimators are described in [suYeon|citation]. The