ANGSD: Analysis of next generation Sequencing Data
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Glf files: Difference between revisions
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(Created page with "DRAGON ;-doGlf 1; tglf binary 10xdouble per sample ;-doGlf 2; beagle output gz requires -doMajorMinor 1/2 ;-doGlf otehrwise text output") |
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This desribes the output format of -doGlf. | |||
;-doGlf 1; | ;-doGlf 1; binary 10xdouble per sample, ordering is AA,AC,AG,AT,CC,CG,CT,GG,GT,TT | ||
;-doGlf 2; beagle | ;-doGlf 2; beagle in/out-put gz requires -doMajorMinor [1|2]. | ||
;-doGlf | ;-doGlf 3; binary beagle in/out-put gz requires -doMajorMinor [1|2] | ||
;-doGlf 4; text format. Output is chr,pos,AA,AC,AG,AT,CC,CG,CT,GG,GT,TT | |||
Latest revision as of 13:00, 24 October 2012
This desribes the output format of -doGlf.
- -doGlf 1; binary 10xdouble per sample, ordering is AA,AC,AG,AT,CC,CG,CT,GG,GT,TT
- -doGlf 2; beagle in/out-put gz requires -doMajorMinor [1|2].
- -doGlf 3; binary beagle in/out-put gz requires -doMajorMinor [1|2]
- -doGlf 4; text format. Output is chr,pos,AA,AC,AG,AT,CC,CG,CT,GG,GT,TT