ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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Showing below up to 93 results in range #1 to #93.
- Temp (20:47, 29 May 2012)
- Li2010 (20:40, 14 June 2012)
- Majorminor (20:41, 14 June 2012)
- Covariance matrix for PCA (15:19, 18 June 2012)
- Inbreed (15:27, 18 June 2012)
- SNP Calling (11:34, 19 June 2012)
- Example of cases control phenotype file (09:09, 21 June 2012)
- Example of a quantitative phenotype file (09:10, 21 June 2012)
- Example of a covariance file (09:10, 21 June 2012)
- Example of a covariate file (09:11, 21 June 2012)
- Regionfile (14:37, 29 June 2012)
- Skotte (12:28, 24 September 2012)
- SoapSNP (12:32, 24 September 2012)
- Introduction (18:13, 23 October 2012)
- Glf files (12:00, 24 October 2012)
- Memory Usage (02:32, 18 December 2012)
- Error estimation method (16:53, 12 February 2013)
- Authors (12:50, 28 June 2013)
- Kim2011 (13:54, 28 June 2013)
- Skotte2012 (10:27, 29 June 2013)
- Nielsen2012 (10:31, 29 June 2013)
- Li2011 (10:38, 29 June 2013)
- Gatk (10:43, 29 June 2013)
- Base quality (08:17, 30 September 2013)
- Korneliussen2013 (14:03, 3 October 2013)
- Angsd structure (19:03, 4 December 2013)
- Changes (18:02, 17 December 2013)
- Depth (12:16, 3 January 2014)
- Tutorial (00:31, 10 January 2014)
- MajorMinor Method (14:15, 26 February 2014)
- ErrorSykMethod (16:12, 26 February 2014)
- ErrorPerfect (16:15, 26 February 2014)
- PostFreq (16:44, 26 February 2014)
- Orlando2013 (13:32, 27 June 2014)
- Rasmussen2011 (13:35, 27 June 2014)
- RealSFSmethod (12:23, 30 June 2014)
- Misc example (10:55, 31 July 2014)
- SYKmaf (18:50, 15 December 2014)
- Bugs (16:05, 26 February 2015)
- NgsRelate (09:23, 20 June 2015)
- Contamination (14:51, 11 July 2015)
- Fst PCA (15:21, 30 July 2015)
- Fst correctness (15:27, 30 July 2015)
- Citing angsd (09:08, 31 August 2015)
- Pbs (17:38, 8 October 2015)
- Sites (15:00, 16 November 2015)
- Major Minor (13:56, 4 December 2015)
- Quick Start (13:58, 4 December 2015)
- ANGSD (14:07, 4 December 2015)
- Supersim (15:18, 4 December 2015)
- Glcomparison (16:44, 5 February 2016)
- Safv3 (16:47, 5 February 2016)
- Abbababa (10:46, 11 March 2016)
- Genotype Distribution (10:16, 14 July 2016)
- Direct Ancestry (21:33, 8 November 2016)
- Error estimation (12:57, 12 January 2017)
- Heterozygosity (12:51, 24 January 2017)
- SnpFilters (20:24, 27 June 2017)
- HWE test (14:32, 23 October 2017)
- Beagle input (17:53, 6 November 2017)
- NGSadmix (15:44, 7 February 2018)
- PCA (15:56, 7 February 2018)
- HWE and Inbreeding estimates (15:59, 7 February 2018)
- ThetaStat (10:10, 20 April 2018)
- Abbababa2 (10:34, 26 June 2018)
- Plink (16:26, 30 April 2019)
- LD (09:57, 17 July 2019)
- 2d SFS Estimation (02:26, 17 August 2019)
- Fst (02:38, 17 August 2019)
- Relatedness (08:21, 29 August 2019)
- Filters (07:49, 15 November 2019)
- PCA MDS (16:26, 20 April 2020)
- Allele Counts (05:34, 2 May 2020)
- Thetas,Tajima,Neutrality tests (13:40, 27 August 2020)
- Haploid calling (10:21, 27 October 2020)
- MsToGlf (15:01, 26 July 2021)
- Genotype Likelihoods (09:56, 28 September 2021)
- Input (09:57, 28 September 2021)
- Genotype likelihoods from alignments new (09:57, 28 September 2021)
- SNP calling (09:59, 28 September 2021)
- Genotype calling (22:14, 2 March 2022)
- Mismatch (22:28, 2 March 2022)
- DistAngsd (08:41, 23 March 2022)
- RealSFS (12:20, 26 June 2022)
- Change log (12:59, 16 July 2022)
- Thorfinn (13:04, 16 July 2022)
- Fasta (17:45, 6 February 2023)
- Association (14:32, 7 June 2023)
- Allele Frequencies (11:16, 8 June 2023)
- Vcf (22:53, 21 June 2023)
- Test (10:05, 24 October 2023)
- SFS Estimation (15:22, 8 December 2023)
- Installation (22:25, 8 December 2023)