ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Oldest pages

Jump to navigation Jump to search

Showing below up to 93 results in range #1 to #93.

View (previous 500 | next 500) (20 | 50 | 100 | 250 | 500)

  1. Temp‏‎ (21:47, 29 May 2012)
  2. Li2010‏‎ (21:40, 14 June 2012)
  3. Majorminor‏‎ (21:41, 14 June 2012)
  4. Covariance matrix for PCA‏‎ (16:19, 18 June 2012)
  5. Inbreed‏‎ (16:27, 18 June 2012)
  6. SNP Calling‏‎ (12:34, 19 June 2012)
  7. Example of cases control phenotype file‏‎ (10:09, 21 June 2012)
  8. Example of a quantitative phenotype file‏‎ (10:10, 21 June 2012)
  9. Example of a covariance file‏‎ (10:10, 21 June 2012)
  10. Example of a covariate file‏‎ (10:11, 21 June 2012)
  11. Regionfile‏‎ (15:37, 29 June 2012)
  12. Skotte‏‎ (13:28, 24 September 2012)
  13. SoapSNP‏‎ (13:32, 24 September 2012)
  14. Introduction‏‎ (19:13, 23 October 2012)
  15. Glf files‏‎ (13:00, 24 October 2012)
  16. Memory Usage‏‎ (03:32, 18 December 2012)
  17. Error estimation method‏‎ (17:53, 12 February 2013)
  18. Authors‏‎ (13:50, 28 June 2013)
  19. Kim2011‏‎ (14:54, 28 June 2013)
  20. Skotte2012‏‎ (11:27, 29 June 2013)
  21. Nielsen2012‏‎ (11:31, 29 June 2013)
  22. Li2011‏‎ (11:38, 29 June 2013)
  23. Gatk‏‎ (11:43, 29 June 2013)
  24. Base quality‏‎ (09:17, 30 September 2013)
  25. Korneliussen2013‏‎ (15:03, 3 October 2013)
  26. Angsd structure‏‎ (20:03, 4 December 2013)
  27. Changes‏‎ (19:02, 17 December 2013)
  28. Depth‏‎ (13:16, 3 January 2014)
  29. Tutorial‏‎ (01:31, 10 January 2014)
  30. MajorMinor Method‏‎ (15:15, 26 February 2014)
  31. ErrorSykMethod‏‎ (17:12, 26 February 2014)
  32. ErrorPerfect‏‎ (17:15, 26 February 2014)
  33. PostFreq‏‎ (17:44, 26 February 2014)
  34. Orlando2013‏‎ (14:32, 27 June 2014)
  35. Rasmussen2011‏‎ (14:35, 27 June 2014)
  36. RealSFSmethod‏‎ (13:23, 30 June 2014)
  37. Misc example‏‎ (11:55, 31 July 2014)
  38. SYKmaf‏‎ (19:50, 15 December 2014)
  39. Bugs‏‎ (17:05, 26 February 2015)
  40. NgsRelate‏‎ (10:23, 20 June 2015)
  41. Contamination‏‎ (15:51, 11 July 2015)
  42. Fst PCA‏‎ (16:21, 30 July 2015)
  43. Fst correctness‏‎ (16:27, 30 July 2015)
  44. Citing angsd‏‎ (10:08, 31 August 2015)
  45. Pbs‏‎ (18:38, 8 October 2015)
  46. Sites‏‎ (16:00, 16 November 2015)
  47. Major Minor‏‎ (14:56, 4 December 2015)
  48. Quick Start‏‎ (14:58, 4 December 2015)
  49. ANGSD‏‎ (15:07, 4 December 2015)
  50. Supersim‏‎ (16:18, 4 December 2015)
  51. Glcomparison‏‎ (17:44, 5 February 2016)
  52. Safv3‏‎ (17:47, 5 February 2016)
  53. Abbababa‏‎ (11:46, 11 March 2016)
  54. Genotype Distribution‏‎ (11:16, 14 July 2016)
  55. Direct Ancestry‏‎ (22:33, 8 November 2016)
  56. Error estimation‏‎ (13:57, 12 January 2017)
  57. Heterozygosity‏‎ (13:51, 24 January 2017)
  58. SnpFilters‏‎ (21:24, 27 June 2017)
  59. HWE test‏‎ (15:32, 23 October 2017)
  60. Beagle input‏‎ (18:53, 6 November 2017)
  61. NGSadmix‏‎ (16:44, 7 February 2018)
  62. PCA‏‎ (16:56, 7 February 2018)
  63. HWE and Inbreeding estimates‏‎ (16:59, 7 February 2018)
  64. ThetaStat‏‎ (11:10, 20 April 2018)
  65. Abbababa2‏‎ (11:34, 26 June 2018)
  66. Plink‏‎ (17:26, 30 April 2019)
  67. LD‏‎ (10:57, 17 July 2019)
  68. 2d SFS Estimation‏‎ (03:26, 17 August 2019)
  69. Fst‏‎ (03:38, 17 August 2019)
  70. Relatedness‏‎ (09:21, 29 August 2019)
  71. Filters‏‎ (08:49, 15 November 2019)
  72. PCA MDS‏‎ (17:26, 20 April 2020)
  73. Allele Counts‏‎ (06:34, 2 May 2020)
  74. Thetas,Tajima,Neutrality tests‏‎ (14:40, 27 August 2020)
  75. Haploid calling‏‎ (11:21, 27 October 2020)
  76. MsToGlf‏‎ (16:01, 26 July 2021)
  77. Genotype Likelihoods‏‎ (10:56, 28 September 2021)
  78. Input‏‎ (10:57, 28 September 2021)
  79. Genotype likelihoods from alignments new‏‎ (10:57, 28 September 2021)
  80. SNP calling‏‎ (10:59, 28 September 2021)
  81. Genotype calling‏‎ (23:14, 2 March 2022)
  82. Mismatch‏‎ (23:28, 2 March 2022)
  83. DistAngsd‏‎ (09:41, 23 March 2022)
  84. RealSFS‏‎ (13:20, 26 June 2022)
  85. Change log‏‎ (13:59, 16 July 2022)
  86. Thorfinn‏‎ (14:04, 16 July 2022)
  87. Fasta‏‎ (18:45, 6 February 2023)
  88. Association‏‎ (15:32, 7 June 2023)
  89. Allele Frequencies‏‎ (12:16, 8 June 2023)
  90. Vcf‏‎ (23:53, 21 June 2023)
  91. Test‏‎ (11:05, 24 October 2023)
  92. SFS Estimation‏‎ (16:22, 8 December 2023)
  93. Installation‏‎ (23:25, 8 December 2023)

View (previous 500 | next 500) (20 | 50 | 100 | 250 | 500)