ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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16 July 2022
- 13:0413:04, 16 July 2022 diff hist 0 Installation No edit summary
- 13:0413:04, 16 July 2022 diff hist +75 Thorfinn No edit summary current
- 13:0313:03, 16 July 2022 diff hist 0 MediaWiki:Sitenotice No edit summary current
- 13:0113:01, 16 July 2022 diff hist 0 Thorfinn No edit summary
- 12:5912:59, 16 July 2022 diff hist +60 Change log No edit summary current
26 June 2022
- 12:2012:20, 26 June 2022 diff hist −6 RealSFS No edit summary current
23 May 2022
- 11:3211:32, 23 May 2022 diff hist −126 Vcf No edit summary
23 March 2022
- 08:4108:41, 23 March 2022 diff hist +201 N DistAngsd Created page with "There are methods for inferring the genetic distance based on genotype likelihoods using proper models within molecular evolution. distAngsd has its very own website https://..." current
2 March 2022
- 22:2822:28, 2 March 2022 diff hist +1 Mismatch No edit summary current
- 22:2722:27, 2 March 2022 diff hist +390 Mismatch No edit summary
- 22:1422:14, 2 March 2022 diff hist +17 Genotype calling →Options current
8 February 2022
- 12:4712:47, 8 February 2022 diff hist 0 Installation No edit summary
- 12:2412:24, 8 February 2022 diff hist +60 Change log No edit summary
- 12:2312:23, 8 February 2022 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:2312:23, 8 February 2022 diff hist 0 Thorfinn No edit summary
18 August 2021
- 10:1010:10, 18 August 2021 diff hist −285 SFS Estimation →Brief Overview
26 July 2021
- 15:0115:01, 26 July 2021 diff hist +108 MsToGlf No edit summary current
15 March 2021
- 10:4710:47, 15 March 2021 diff hist +60 Change log No edit summary
- 10:4710:47, 15 March 2021 diff hist 0 MediaWiki:Sitenotice No edit summary
- 10:4510:45, 15 March 2021 diff hist +12 Installation No edit summary
- 10:3910:39, 15 March 2021 diff hist 0 Thorfinn →Make a new github version to put on github
- 10:3810:38, 15 March 2021 diff hist +12 Thorfinn →Make a combined angsd htslib to put on wiki download
27 October 2020
- 10:2110:21, 27 October 2020 diff hist −118 Haploid calling →Major bug in version 0.911 (not in <0.911) current
27 August 2020
- 13:4013:40, 27 August 2020 diff hist +80 Thetas,Tajima,Neutrality tests →Full command list for below examples current
2 May 2020
- 05:3405:34, 2 May 2020 diff hist 0 Allele Counts →Depth Distribution current
27 April 2020
- 17:3817:38, 27 April 2020 diff hist +60 Change log →Latests
- 16:3716:37, 27 April 2020 diff hist 0 Thorfinn No edit summary
1 April 2020
- 12:0612:06, 1 April 2020 diff hist +109 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 12:0512:05, 1 April 2020 diff hist +169 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 12:0312:03, 1 April 2020 diff hist +37 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 11:5611:56, 1 April 2020 diff hist −493 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5211:52, 1 April 2020 diff hist −38 Thetas,Tajima,Neutrality tests →Step 2: Calculate the thetas for each site
15 November 2019
- 07:4907:49, 15 November 2019 diff hist −154 Filters →Number of non missing individuals current
- 07:4807:48, 15 November 2019 diff hist +3 Filters →Number of non missing individuals
25 October 2019
- 16:5216:52, 25 October 2019 diff hist +95 SFS Estimation No edit summary
26 August 2019
- 11:1211:12, 26 August 2019 diff hist 0 Installation No edit summary
- 11:1011:10, 26 August 2019 diff hist +60 Change log No edit summary
- 11:0911:09, 26 August 2019 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:0911:09, 26 August 2019 diff hist +16 Thorfinn No edit summary
17 August 2019
- 02:3802:38, 17 August 2019 diff hist +595 Fst →Note about fst for folded spectra current
- 02:3102:31, 17 August 2019 diff hist +39 Fst No edit summary
- 02:2602:26, 17 August 2019 diff hist +15 2d SFS Estimation No edit summary current
- 02:2502:25, 17 August 2019 diff hist +140 2d SFS Estimation No edit summary
- 02:2402:24, 17 August 2019 diff hist +36 2d SFS Estimation No edit summary
- 02:2302:23, 17 August 2019 diff hist +174 2d SFS Estimation No edit summary
30 April 2019
- 16:2616:26, 30 April 2019 diff hist +535 Plink No edit summary current
22 February 2019
- 17:4017:40, 22 February 2019 diff hist −43 Installation No edit summary
- 17:3917:39, 22 February 2019 diff hist +60 Change log →Latests
- 17:3817:38, 22 February 2019 diff hist 0 MediaWiki:Sitenotice No edit summary
- 17:3717:37, 22 February 2019 diff hist 0 Thorfinn →Make a new github version to put on github
- 17:3617:36, 22 February 2019 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 17:3017:30, 22 February 2019 diff hist 0 Thorfinn →Make a new github version to put on github
- 17:2917:29, 22 February 2019 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 17:2817:28, 22 February 2019 diff hist −199 Input →Arguments
- 17:2717:27, 22 February 2019 diff hist 0 Input →Example
- 17:2517:25, 22 February 2019 diff hist −110 Input →VCF files
- 17:2417:24, 22 February 2019 diff hist −2 Input →VCF files
- 17:2317:23, 22 February 2019 diff hist +4,482 Input →Sequence data (BAM/CRAM/mpileup)
- 17:2317:23, 22 February 2019 diff hist −4,482 Input →VCF files
- 17:2317:23, 22 February 2019 diff hist −4,724 Input →VCF files
28 January 2019
- 17:1517:15, 28 January 2019 diff hist 0 Thorfinn →How to deploy
- 17:0817:08, 28 January 2019 diff hist +60 Change log No edit summary
- 17:0817:08, 28 January 2019 diff hist 0 MediaWiki:Sitenotice No edit summary
- 16:5616:56, 28 January 2019 diff hist +20 Thorfinn →Make a combined angsd htslib to put on wiki download
11 October 2018
- 11:1911:19, 11 October 2018 diff hist +59 Change log →Latests
- 11:1811:18, 11 October 2018 diff hist 0 MediaWiki:Sitenotice No edit summary
- 11:1811:18, 11 October 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 11:1611:16, 11 October 2018 diff hist 0 Installation No edit summary
- 11:1511:15, 11 October 2018 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
- 10:3210:32, 11 October 2018 diff hist −43 Installation No edit summary
28 September 2018
- 04:3504:35, 28 September 2018 diff hist −11 Installation →Install from github
- 04:1104:11, 28 September 2018 diff hist 0 Installation →Install from github
- 04:0204:02, 28 September 2018 diff hist +54 Installation →Install from github
20 April 2018
- 10:1010:10, 20 April 2018 diff hist +160 ThetaStat No edit summary current
25 January 2018
- 23:1323:13, 25 January 2018 diff hist 0 User:Thorfinn →ms and psmc stuff current
- 22:0722:07, 25 January 2018 diff hist +1 User:Thorfinn →ms and psmc stuff
- 22:0422:04, 25 January 2018 diff hist +3 User:Thorfinn →ms and psmc stuff
- 22:0222:02, 25 January 2018 diff hist 0 User:Thorfinn →ms and psmc stuff
- 21:5921:59, 25 January 2018 diff hist +4 User:Thorfinn →ms and psmc stuff
- 21:5621:56, 25 January 2018 diff hist +1 User:Thorfinn →ms and psmc stuff
- 21:5621:56, 25 January 2018 diff hist +2 User:Thorfinn →ms and psmc stuff
- 21:5621:56, 25 January 2018 diff hist +739 User:Thorfinn →ms stuff
- 20:2620:26, 25 January 2018 diff hist 0 User:Thorfinn →ms stuff
- 20:2620:26, 25 January 2018 diff hist +57 User:Thorfinn →ms stuff
- 20:2220:22, 25 January 2018 diff hist −1 User:Thorfinn →ms stuff
- 20:2120:21, 25 January 2018 diff hist +112 User:Thorfinn No edit summary
9 January 2018
- 12:5412:54, 9 January 2018 diff hist 0 Installation →Unix
- 12:5412:54, 9 January 2018 diff hist 0 Installation →Download and Installation
- 12:5412:54, 9 January 2018 diff hist 0 Installation No edit summary
- 12:5112:51, 9 January 2018 diff hist 0 Change log No edit summary
- 12:5012:50, 9 January 2018 diff hist +60 Change log →Latests
- 12:4912:49, 9 January 2018 diff hist 0 MediaWiki:Sitenotice No edit summary
- 12:4712:47, 9 January 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 12:4712:47, 9 January 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 12:4712:47, 9 January 2018 diff hist 0 Thorfinn →Make a new github version to put on github
- 12:3612:36, 9 January 2018 diff hist 0 Thorfinn →Make a combined angsd htslib to put on wiki download
6 November 2017
- 17:5317:53, 6 November 2017 diff hist +67 Beagle input No edit summary current
2 November 2017
- 20:3920:39, 2 November 2017 diff hist +766 Input →-glf10_text
- 20:3520:35, 2 November 2017 diff hist +17 Input →VCF files
- 20:3520:35, 2 November 2017 diff hist −17 Input →-glf10_text