ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

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  1. Test‏‎ (1 revision)
  2. Temp‏‎ (1 revision)
  3. ErrorPerfect‏‎ (1 revision)
  4. MajorMinor Method‏‎ (1 revision)
  5. Memory Usage‏‎ (1 revision)
  6. PostFreq‏‎ (1 revision)
  7. Example of a quantitative phenotype file‏‎ (1 revision)
  8. Majorminor‏‎ (1 revision)
  9. Example of a covariate file‏‎ (1 revision)
  10. Example of a covariance file‏‎ (1 revision)
  11. Li2010‏‎ (1 revision)
  12. DistAngsd‏‎ (1 revision)
  13. SoapSNP‏‎ (1 revision)
  14. Inbreed‏‎ (1 revision)
  15. Rasmussen2011‏‎ (1 revision)
  16. Example of cases control phenotype file‏‎ (1 revision)
  17. Fst correctness‏‎ (1 revision)
  18. NgsRelate‏‎ (1 revision)
  19. Covariance matrix for PCA‏‎ (1 revision)
  20. Supersim‏‎ (2 revisions)
  21. ErrorSykMethod‏‎ (2 revisions)
  22. Error estimation method‏‎ (2 revisions)
  23. Orlando2013‏‎ (2 revisions)
  24. Skotte‏‎ (2 revisions)
  25. Li2011‏‎ (2 revisions)
  26. Glf files‏‎ (2 revisions)
  27. Direct Ancestry‏‎ (2 revisions)
  28. Pbs‏‎ (2 revisions)
  29. LD‏‎ (2 revisions)
  30. RealSFSmethod‏‎ (3 revisions)
  31. Regionfile‏‎ (3 revisions)
  32. SNP Calling‏‎ (3 revisions)
  33. ThetaStat‏‎ (3 revisions)
  34. Changes‏‎ (3 revisions)
  35. Kim2011‏‎ (3 revisions)
  36. Gatk‏‎ (3 revisions)
  37. SYKmaf‏‎ (3 revisions)
  38. Korneliussen2013‏‎ (4 revisions)
  39. Misc example‏‎ (4 revisions)
  40. Nielsen2012‏‎ (4 revisions)
  41. Skotte2012‏‎ (4 revisions)
  42. Mismatch‏‎ (5 revisions)
  43. Vcf‏‎ (5 revisions)
  44. Genotype Distribution‏‎ (6 revisions)
  45. Base quality‏‎ (7 revisions)
  46. PCA‏‎ (7 revisions)
  47. Genotype likelihoods from alignments new‏‎ (8 revisions)
  48. Glcomparison‏‎ (8 revisions)
  49. SNP calling‏‎ (8 revisions)
  50. Introduction‏‎ (8 revisions)
  51. Haploid calling‏‎ (9 revisions)
  52. NGSadmix‏‎ (10 revisions)
  53. Angsd structure‏‎ (11 revisions)
  54. Depth‏‎ (13 revisions)
  55. Beagle input‏‎ (13 revisions)
  56. Authors‏‎ (14 revisions)
  57. Heterozygosity‏‎ (16 revisions)
  58. SnpFilters‏‎ (18 revisions)
  59. HWE test‏‎ (19 revisions)
  60. HWE and Inbreeding estimates‏‎ (20 revisions)
  61. Safv3‏‎ (20 revisions)
  62. Relatedness‏‎ (21 revisions)
  63. Citing angsd‏‎ (23 revisions)
  64. Fst‏‎ (23 revisions)
  65. Plink‏‎ (24 revisions)
  66. Genotype calling‏‎ (27 revisions)
  67. Contamination‏‎ (29 revisions)
  68. Abbababa‏‎ (31 revisions)
  69. PCA MDS‏‎ (39 revisions)
  70. Tutorial‏‎ (39 revisions)
  71. Thorfinn‏‎ (39 revisions)
  72. MsToGlf‏‎ (39 revisions)
  73. 2d SFS Estimation‏‎ (43 revisions)
  74. Sites‏‎ (45 revisions)
  75. Major Minor‏‎ (46 revisions)
  76. Bugs‏‎ (50 revisions)
  77. RealSFS‏‎ (54 revisions)
  78. Abbababa2‏‎ (54 revisions)
  79. Fasta‏‎ (60 revisions)
  80. Fst PCA‏‎ (60 revisions)
  81. Allele Counts‏‎ (62 revisions)
  82. Allele Frequencies‏‎ (71 revisions)
  83. Quick Start‏‎ (82 revisions)
  84. Filters‏‎ (86 revisions)
  85. Change log‏‎ (104 revisions)
  86. Error estimation‏‎ (105 revisions)
  87. Input‏‎ (125 revisions)
  88. ANGSD‏‎ (141 revisions)
  89. Installation‏‎ (151 revisions)
  90. Thetas,Tajima,Neutrality tests‏‎ (154 revisions)
  91. Genotype Likelihoods‏‎ (161 revisions)
  92. Association‏‎ (189 revisions)
  93. SFS Estimation‏‎ (267 revisions)

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