ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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Showing below up to 93 results in range #1 to #93.
- SFS Estimation (267 revisions)
- Association (189 revisions)
- Genotype Likelihoods (161 revisions)
- Thetas,Tajima,Neutrality tests (154 revisions)
- Installation (151 revisions)
- ANGSD (141 revisions)
- Input (125 revisions)
- Error estimation (105 revisions)
- Change log (104 revisions)
- Filters (86 revisions)
- Quick Start (82 revisions)
- Allele Frequencies (71 revisions)
- Allele Counts (62 revisions)
- Fst PCA (60 revisions)
- Fasta (60 revisions)
- Abbababa2 (54 revisions)
- RealSFS (54 revisions)
- Bugs (50 revisions)
- Major Minor (46 revisions)
- Sites (45 revisions)
- 2d SFS Estimation (43 revisions)
- Tutorial (39 revisions)
- Thorfinn (39 revisions)
- PCA MDS (39 revisions)
- MsToGlf (39 revisions)
- Abbababa (31 revisions)
- Contamination (29 revisions)
- Genotype calling (27 revisions)
- Plink (24 revisions)
- Citing angsd (23 revisions)
- Fst (23 revisions)
- Relatedness (21 revisions)
- Safv3 (20 revisions)
- HWE and Inbreeding estimates (20 revisions)
- HWE test (19 revisions)
- SnpFilters (18 revisions)
- Heterozygosity (16 revisions)
- Authors (14 revisions)
- Depth (13 revisions)
- Beagle input (13 revisions)
- Angsd structure (11 revisions)
- NGSadmix (10 revisions)
- Haploid calling (9 revisions)
- Glcomparison (8 revisions)
- Introduction (8 revisions)
- SNP calling (8 revisions)
- Genotype likelihoods from alignments new (8 revisions)
- Base quality (7 revisions)
- PCA (7 revisions)
- Genotype Distribution (6 revisions)
- Mismatch (5 revisions)
- Vcf (5 revisions)
- Korneliussen2013 (4 revisions)
- Misc example (4 revisions)
- Skotte2012 (4 revisions)
- Nielsen2012 (4 revisions)
- RealSFSmethod (3 revisions)
- Changes (3 revisions)
- Regionfile (3 revisions)
- SNP Calling (3 revisions)
- Kim2011 (3 revisions)
- Gatk (3 revisions)
- SYKmaf (3 revisions)
- ThetaStat (3 revisions)
- ErrorSykMethod (2 revisions)
- Supersim (2 revisions)
- Orlando2013 (2 revisions)
- Direct Ancestry (2 revisions)
- Glf files (2 revisions)
- Error estimation method (2 revisions)
- Li2011 (2 revisions)
- LD (2 revisions)
- Skotte (2 revisions)
- Pbs (2 revisions)
- Example of a covariance file (1 revision)
- NgsRelate (1 revision)
- Li2010 (1 revision)
- DistAngsd (1 revision)
- SoapSNP (1 revision)
- Test (1 revision)
- ErrorPerfect (1 revision)
- Covariance matrix for PCA (1 revision)
- Example of cases control phenotype file (1 revision)
- Example of a covariate file (1 revision)
- Example of a quantitative phenotype file (1 revision)
- PostFreq (1 revision)
- Fst correctness (1 revision)
- Memory Usage (1 revision)
- Temp (1 revision)
- Inbreed (1 revision)
- Rasmussen2011 (1 revision)
- Majorminor (1 revision)
- MajorMinor Method (1 revision)