Difference between revisions of "Publications"

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<pubmed limit=35  layoutfile="layout_ext2.def" layoutlinks="PMID"> (( ((Heller R[Author]) AND Copenhagen[Affiliation] NOT (Heller RS[Author])) OR Siegismund HR[Author]  OR Da Fonseca RR[Author] OR Albrechtsen A[Author] OR Soraggi S[Author] OR Moltke I[Author] OR ((Athanasiadis G[Author]) AND Aarhus[Affiliation]) )) AND ("2019"[Date - Publication] : "2019"[Date - Publication])  </pubmed>
  
 
=2018=
 
=2018=

Revision as of 12:26, 2 January 2019

2019

Alba Refoyo-Martínez, Rute R da Fonseca, Katrín Halldórsdóttir, Einar Árnason, Thomas Mailund, Fernando Racimo
Identifying loci under positive selection in complex population histories.
Genome Res.: 2019;
[PubMed:31362936] (I a)

Vincenza Colonna, Nunzio D'Agostino, Erik Garrison, Anders Albrechtsen, Jonas Meisner, Angelo Facchiano, Teodoro Cardi, Pasquale Tripodi
Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites.
Sci Rep: 2019, 9(1);10067
[PubMed:31296904] (I e)

Ângela M Ribeiro, Lara Puetz, Nicholas B Pattinson, Love Dalén, Yuan Deng, Guojie Zhang, Rute R da Fonseca, Ben Smit, M Thomas P Gilbert
31° South: The physiology of adaptation to arid conditions in a passerine bird.
Mol. Ecol.: 2019;
[PubMed:31291502] (I a)

Yu Wang, Chenzhou Zhang, Nini Wang, Zhipeng Li, Rasmus Heller, Rong Liu, Yue Zhao, Jiangang Han, Xiangyu Pan, Zhuqing Zheng, Xueqin Dai, Ceshi Chen, Mingle Dou, Shujun Peng, Xianqing Chen, Jing Liu, Ming Li, Kun Wang, Chang Liu, Zeshan Lin, Lei Chen, Fei Hao, Wenbo Zhu, Chengchuang Song, Chen Zhao, Chengli Zheng, Jianming Wang, Shengwei Hu, Cunyuan Li, Hui Yang, Lin Jiang, Guangyu Li, Mingjun Liu, Tad S Sonstegard, Guojie Zhang, Yu Jiang, Wen Wang, Qiang Qiu
Genetic basis of ruminant headgear and rapid antler regeneration.
Science: 2019, 364(6446);
[PubMed:31221830] (I p)

Zeshan Lin, Lei Chen, Xianqing Chen, Yingbin Zhong, Yue Yang, Wenhao Xia, Chang Liu, Wenbo Zhu, Han Wang, Biyao Yan, Yifeng Yang, Xing Liu, Kjersti Sternang Kvie, Knut Håkon Røed, Kun Wang, Wuhan Xiao, Haijun Wei, Guangyu Li, Rasmus Heller, M Thomas P Gilbert, Qiang Qiu, Wen Wang, Zhipeng Li

Science: 2019, 364(6446);
[PubMed:31221829] (I p)

Lei Chen, Qiang Qiu, Yu Jiang, Kun Wang, Zeshan Lin, Zhipeng Li, Faysal Bibi, Yongzhi Yang, Jinhuan Wang, Wenhui Nie, Weiting Su, Guichun Liu, Qiye Li, Weiwei Fu, Xiangyu Pan, Chang Liu, Jie Yang, Chenzhou Zhang, Yuan Yin, Yu Wang, Yue Zhao, Chen Zhang, Zhongkai Wang, Yanli Qin, Wei Liu, Bao Wang, Yandong Ren, Ru Zhang, Yan Zeng, Rute R da Fonseca, Bin Wei, Ran Li, Wenting Wan, Ruoping Zhao, Wenbo Zhu, Yutao Wang, Shengchang Duan, Yun Gao, Yong E Zhang, Chunyan Chen, Christina Hvilsom, Clinton W Epps, Leona G Chemnick, Yang Dong, Siavash Mirarab, Hans Redlef Siegismund, Oliver A Ryder, M Thomas P Gilbert, Harris A Lewin, Guojie Zhang, Rasmus Heller, Wen Wang
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.
Science: 2019, 364(6446);
[PubMed:31221828] (I p)

Rute R da Fonseca, Irene Ureña, Sandra Afonso, Ana Elisabete Pires, Emil Jørsboe, Lounès Chikhi, Catarina Ginja
Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle.
BMC Genomics: 2019, 20(1);334
[PubMed:31053061] (I e)

Kristian Hanghøj, Ida Moltke, Philip Alstrup Andersen, Andrea Manica, Thorfinn Sand Korneliussen
Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding.
Gigascience: 2019, 8(5);
[PubMed:31042285] (I p)

Kristian Hanghøj, Gabriel Renaud, Anders Albrechtsen, Ludovic Orlando
DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage.
Gigascience: 2019, 8(4);
[PubMed:31004132] (I p)

Jonas Meisner, Anders Albrechtsen
Testing for Hardy-Weinberg equilibrium in structured populations using genotype or low-depth next generation sequencing data.
Mol Ecol Resour: 2019;
[PubMed:30977299] (I a)

Line Skotte, Emil Jørsboe, Thorfinn S Korneliussen, Ida Moltke, Anders Albrechtsen
Ancestry-specific association mapping in admixed populations.
Genet. Epidemiol.: 2019, 43(5);506-521
[PubMed:30883944] (I p)

Jeffrey Rogers, Muthuswamy Raveendran, R Alan Harris, Thomas Mailund, Kalle Leppälä, Georgios Athanasiadis, Mikkel Heide Schierup, Jade Cheng, Kasper Munch, Jerilyn A Walker, Miriam K Konkel, Vallmer Jordan, Cody J Steely, Thomas O Beckstrom, Christina Bergey, Andrew Burrell, Dominik Schrempf, Angela Noll, Maximillian Kothe, Gisela H Kopp, Yue Liu, Shwetha Murali, Konstantinos Billis, Fergal J Martin, Matthieu Muffato, Laura Cox, James Else, Todd Disotell, Donna M Muzny, Jane Phillips-Conroy, Bronwen Aken, Evan E Eichler, Tomas Marques-Bonet, Carolin Kosiol, Mark A Batzer, Matthew W Hahn, Jenny Tung, Dietmar Zinner, Christian Roos, Clifford J Jolly, Richard A Gibbs, Kim C Worley, Baboon Genome Analysis Consortium

Sci Adv: 2019, 5(1);eaau6947
[PubMed:30854422] (I e)

Samuele Soraggi, Carsten Wiuf
General theory for stochastic admixture graphs and F-statistics.
Theor Popul Biol: 2019, 125;56-66
[PubMed:30562538] (I p)

Ryan K Waples, Anders Albrechtsen, Ida Moltke
Allele frequency-free inference of close familial relationships from genotypes or low-depth sequencing data.
Mol. Ecol.: 2019, 28(1);35-48
[PubMed:30462358] (I p)

Ângela M Ribeiro, Carlos A Canchaya, Fernando Penaloza, Juan Galindo, Rute R da Fonseca
Population genomic footprints of environmental pollution pressure in natural populations of the Mediterranean mussel.
Mar Genomics: 2019, 45;11-15
[PubMed:30447893] (I p)


2018

Arthur Gilly, Daniel Suveges, Karoline Kuchenbaecker, Martin Pollard, Lorraine Southam, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Thea Bjornland, Ryan Waples, Emil V R Appel, Elisabetta Casalone, Giorgio Melloni, Britt Kilian, Nigel W Rayner, Ioanna Ntalla, Kousik Kundu, Klaudia Walter, John Danesh, Adam Butterworth, Inês Barroso, Emmanouil Tsafantakis, George Dedoussis, Ida Moltke, Eleftheria Zeggini
Author Correction: Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.
Nat Commun: 2018, 9(1);5460
[PubMed:30568165] (I e)

Samuele Soraggi, Carsten Wiuf
General theory for stochastic admixture graphs and F-statistics.
Theor Popul Biol: 2019, 125;56-66
[PubMed:30562538] (I p)

Charles Christian Riis Hansen, Christina Hvilsom, Niels Martin Schmidt, Peter Aastrup, Peter J Van Coeverden de Groot, Hans Redlef Siegismund, Rasmus Heller
The Muskox Lost a Substantial Part of Its Genetic Diversity on Its Long Road to Greenland.
Curr. Biol.: 2018, 28(24);4022-4028.e5
[PubMed:30528581] (I p)

Ângela M Ribeiro, Carlos A Canchaya, Fernando Penaloza, Juan Galindo, Rute R da Fonseca
Population genomic footprints of environmental pollution pressure in natural populations of the Mediterranean mussel.
Mar Genomics: 2019, 45;11-15
[PubMed:30447893] (I p)

Arthur Gilly, Daniel Suveges, Karoline Kuchenbaecker, Martin Pollard, Lorraine Southam, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Thea Bjornland, Ryan Waples, Emil V R Appel, Elisabetta Casalone, Giorgio Melloni, Britt Kilian, Nigel W Rayner, Ioanna Ntalla, Kousik Kundu, Klaudia Walter, John Danesh, Adam Butterworth, Inês Barroso, Emmanouil Tsafantakis, George Dedoussis, Ida Moltke, Eleftheria Zeggini
Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.
Nat Commun: 2018, 9(1);4674
[PubMed:30405126] (I e)

André M Machado, Ole K Tørresen, Naoki Kabeya, Alvarina Couto, Bent Petersen, Mónica Felício, Paula F Campos, Elza Fonseca, Narcisa Bandarra, Mónica Lopes-Marques, Renato Ferraz, Raquel Ruivo, Miguel M Fonseca, Sissel Jentoft, Óscar Monroig, Rute R da Fonseca, L Filipe C Castro

Genes (Basel): 2018, 9(10);
[PubMed:30304855] (P e)

Siyang Liu, Shujia Huang, Fang Chen, Lijian Zhao, Yuying Yuan, Stephen Starko Francis, Lin Fang, Zilong Li, Long Lin, Rong Liu, Yong Zhang, Huixin Xu, Shengkang Li, Yuwen Zhou, Robert W Davies, Qiang Liu, Robin G Walters, Kuang Lin, Jia Ju, Thorfinn Korneliussen, Melinda A Yang, Qiaomei Fu, Jun Wang, Lijun Zhou, Anders Krogh, Hongyun Zhang, Wei Wang, Zhengming Chen, Zhiming Cai, Ye Yin, Huanming Yang, Mao Mao, Jay Shendure, Jian Wang, Anders Albrechtsen, Xin Jin, Rasmus Nielsen, Xun Xu
Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History.
Cell: 2018, 175(2);347-359.e14
[PubMed:30290141] (I p)

Jonas Meisner, Anders Albrechtsen
Inferring Population Structure and Admixture Proportions in Low-Depth NGS Data.
Genetics: 2018, 210(2);719-731
[PubMed:30131346] (I p)

Niels Grarup, Ida Moltke, Mette K Andersen, Peter Bjerregaard, Christina V L Larsen, Inger K Dahl-Petersen, Emil Jørsboe, Hemant K Tiwari, Scarlett E Hopkins, Howard W Wiener, Bert B Boyer, Allan Linneberg, Oluf Pedersen, Marit E Jørgensen, Anders Albrechtsen, Torben Hansen
Identification of novel high-impact recessively inherited type 2 diabetes risk variants in the Greenlandic population.
Diabetologia: 2018, 61(9);2005-2015
[PubMed:29926116] (I p)

André M Machado, Mónica Felício, Elza Fonseca, Rute R da Fonseca, L Filipe C Castro

Data Brief: 2018, 18;276-284
[PubMed:29896516] (P e)

Melissa A Ilardo, Ida Moltke, Thorfinn S Korneliussen, Jade Cheng, Aaron J Stern, Fernando Racimo, Peter de Barros Damgaard, Martin Sikora, Andaine Seguin-Orlando, Simon Rasmussen, Inge C L van den Munckhof, Rob Ter Horst, Leo A B Joosten, Mihai G Netea, Suhartini Salingkat, Rasmus Nielsen, Eske Willerslev
Physiological and Genetic Adaptations to Diving in Sea Nomads.
Cell: 2018, 173(3);569-580.e15
[PubMed:29677510] (I p)

Mette Korre Andersen, Niels Grarup, Ida Moltke, Anders Albrechtsen, Torben Hansen
Genetic architecture of obesity and related metabolic traits-recent insights from isolated populations.
Curr. Opin. Genet. Dev.: 2018, 50;74-78
[PubMed:29510341] (I p)

Emil V R Appel, Ida Moltke, Marit E Jørgensen, Peter Bjerregaard, Allan Linneberg, Oluf Pedersen, Anders Albrechtsen, Torben Hansen, Niels Grarup
Genetic determinants of glycated hemoglobin levels in the Greenlandic Inuit population.
Eur. J. Hum. Genet.: 2018, 26(6);868-875
[PubMed:29483669] (I p)

Charleen Gaunitz, Antoine Fages, Kristian Hanghøj, Anders Albrechtsen, Naveed Khan, Mikkel Schubert, Andaine Seguin-Orlando, Ivy J Owens, Sabine Felkel, Olivier Bignon-Lau, Peter de Barros Damgaard, Alissa Mittnik, Azadeh F Mohaseb, Hossein Davoudi, Saleh Alquraishi, Ahmed H Alfarhan, Khaled A S Al-Rasheid, Eric Crubézy, Norbert Benecke, Sandra Olsen, Dorcas Brown, David Anthony, Ken Massy, Vladimir Pitulko, Aleksei Kasparov, Gottfried Brem, Michael Hofreiter, Gulmira Mukhtarova, Nurbol Baimukhanov, Lembi Lõugas, Vedat Onar, Philipp W Stockhammer, Johannes Krause, Bazartseren Boldgiv, Sainbileg Undrakhbold, Diimaajav Erdenebaatar, Sébastien Lepetz, Marjan Mashkour, Arne Ludwig, Barbara Wallner, Victor Merz, Ilja Merz, Viktor Zaibert, Eske Willerslev, Pablo Librado, Alan K Outram, Ludovic Orlando
Ancient genomes revisit the ancestry of domestic and Przewalski's horses.
Science: 2018, 360(6384);111-114
[PubMed:29472442] (I p)

Casper-Emil T Pedersen, Anders Albrechtsen, Paul D Etter, Eric A Johnson, Ludovic Orlando, Lounes Chikhi, Hans R Siegismund, Rasmus Heller
A southern African origin and cryptic structure in the highly mobile plains zebra.
Nat Ecol Evol: 2018, 2(3);491-498
[PubMed:29358610] (I p)

Reeta Sharma, Benoit Goossens, Rasmus Heller, Rita Rasteiro, Nurzhafarina Othman, Michael W Bruford, Lounès Chikhi
Genetic analyses favour an ancient and natural origin of elephants on Borneo.
Sci Rep: 2018, 8(1);880
[PubMed:29343863] (I e)

J Víctor Moreno-Mayar, Ben A Potter, Lasse Vinner, Matthias Steinrücken, Simon Rasmussen, Jonathan Terhorst, John A Kamm, Anders Albrechtsen, Anna-Sapfo Malaspinas, Martin Sikora, Joshua D Reuther, Joel D Irish, Ripan S Malhi, Ludovic Orlando, Yun S Song, Rasmus Nielsen, David J Meltzer, Eske Willerslev
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans.
Nature: 2018, 553(7687);203-207
[PubMed:29323294] (I p)

Niels Grarup, Ida Moltke, Mette K Andersen, Maria Dalby, Kristoffer Vitting-Seerup, Timo Kern, Yuvaraj Mahendran, Emil Jørsboe, Christina V L Larsen, Inger K Dahl-Petersen, Arthur Gilly, Daniel Suveges, George Dedoussis, Eleftheria Zeggini, Oluf Pedersen, Robin Andersson, Peter Bjerregaard, Marit E Jørgensen, Anders Albrechtsen, Torben Hansen
Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes.
Nat. Genet.: 2018, 50(2);172-174
[PubMed:29311636] (I p)

Samuele Soraggi, Carsten Wiuf, Anders Albrechtsen
Powerful Inference with the D-Statistic on Low-Coverage Whole-Genome Data.
G3 (Bethesda): 2018, 8(2);551-566
[PubMed:29196497] (I e)


2017

Gemma G R Murray, André E R Soares, Ben J Novak, Nathan K Schaefer, James A Cahill, Allan J Baker, John R Demboski, Andrew Doll, Rute R Da Fonseca, Tara L Fulton, M Thomas P Gilbert, Peter D Heintzman, Brandon Letts, George McIntosh, Brendan L O'Connell, Mark Peck, Marie-Lorraine Pipes, Edward S Rice, Kathryn M Santos, A Gregory Sohrweide, Samuel H Vohr, Russell B Corbett-Detig, Richard E Green, Beth Shapiro
Natural selection shaped the rise and fall of passenger pigeon genomic diversity.
Science: 2017, 358(6365);951-954
[PubMed:29146814] (I p)

Jes Sloth Mathiesen, Jens Peter Kroustrup, Peter Vestergaard, Kirstine Stochholm, Per Løgstrup Poulsen, Åse Krogh Rasmussen, Ulla Feldt-Rasmussen, Mette Gaustadnes, Torben Falck Ørntoft, Maria Rossing, Finn Cilius Nielsen, Anders Albrechtsen, Kim Brixen, Christian Godballe, Anja Lisbeth Frederiksen

Thyroid: 2017, 27(12);1505-1510
[PubMed:29020875] (I p)

Martin Sikora, Andaine Seguin-Orlando, Vitor C Sousa, Anders Albrechtsen, Thorfinn Korneliussen, Amy Ko, Simon Rasmussen, Isabelle Dupanloup, Philip R Nigst, Marjolein D Bosch, Gabriel Renaud, Morten E Allentoft, Ashot Margaryan, Sergey V Vasilyev, Elizaveta V Veselovskaya, Svetlana B Borutskaya, Thibaut Deviese, Dan Comeskey, Tom Higham, Andrea Manica, Robert Foley, David J Meltzer, Rasmus Nielsen, Laurent Excoffier, Marta Mirazon Lahr, Ludovic Orlando, Eske Willerslev
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers.
Science: 2017, 358(6363);659-662
[PubMed:28982795] (I p)

Emil Jørsboe, Kristian Hanghøj, Anders Albrechtsen
fastNGSadmix: admixture proportions and principal component analysis of a single NGS sample.
Bioinformatics: 2017, 33(19);3148-3150
[PubMed:28957500] (I p)

Ashot Margaryan, Miroslava Derenko, Hrant Hovhannisyan, Boris Malyarchuk, Rasmus Heller, Zaruhi Khachatryan, Pavel Avetisyan, Ruben Badalyan, Arsen Bobokhyan, Varduhi Melikyan, Gagik Sargsyan, Ashot Piliposyan, Hakob Simonyan, Ruzan Mkrtchyan, Galina Denisova, Levon Yepiskoposyan, Eske Willerslev, Morten E Allentoft
Eight Millennia of Matrilineal Genetic Continuity in the South Caucasus.
Curr. Biol.: 2017, 27(13);2023-2028.e7
[PubMed:28669760] (I p)

Georgios Athanasiadis
Recent migration and sample representativeness in a Danish genetic study.
Ann. Hum. Biol.: 2017, 44(5);484-486
[PubMed:28637372] (I p)

Jordi Salmona, Rasmus Heller, Erwan Quéméré, Lounès Chikhi
Climate change and human colonization triggered habitat loss and fragmentation in Madagascar.
Mol. Ecol.: 2017, 26(19);5203-5222
[PubMed:28488335] (I p)

Pablo Librado, Cristina Gamba, Charleen Gaunitz, Clio Der Sarkissian, Mélanie Pruvost, Anders Albrechtsen, Antoine Fages, Naveed Khan, Mikkel Schubert, Vidhya Jagannathan, Aitor Serres-Armero, Lukas F K Kuderna, Inna S Povolotskaya, Andaine Seguin-Orlando, Sébastien Lepetz, Markus Neuditschko, Catherine Thèves, Saleh Alquraishi, Ahmed H Alfarhan, Khaled Al-Rasheid, Stefan Rieder, Zainolla Samashev, Henri-Paul Francfort, Norbert Benecke, Michael Hofreiter, Arne Ludwig, Christine Keyser, Tomas Marques-Bonet, Bertrand Ludes, Eric Crubézy, Tosso Leeb, Eske Willerslev, Ludovic Orlando
Ancient genomic changes associated with domestication of the horse.
Science: 2017, 356(6336);442-445
[PubMed:28450643] (I p)

Alastair R Tanner, Dirk Fuchs, Inger E Winkelmann, M Thomas P Gilbert, M Sabrina Pankey, Ângela M Ribeiro, Kevin M Kocot, Kenneth M Halanych, Todd H Oakley, Rute R da Fonseca, Davide Pisani, Jakob Vinther
Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution.
Proc. Biol. Sci.: 2017, 284(1850);
[PubMed:28250188] (I p)

Yoshan Moodley, Isa-Rita M Russo, Desiré L Dalton, Antoinette Kotzé, Shadrack Muya, Patricia Haubensak, Boglárka Bálint, Gopi K Munimanda, Caroline Deimel, Andrea Setzer, Kara Dicks, Barbara Herzig-Straschil, Daniela C Kalthoff, Hans R Siegismund, Jan Robovský, Paul O'Donoghue, Michael W Bruford
Extinctions, genetic erosion and conservation options for the black rhinoceros (Diceros bicornis).
Sci Rep: 2017, 7;41417
[PubMed:28176810] (I e)

Miguel M Álvarez-Álvarez, Daniela Zanetti, Robert Carreras-Torres, Pedro Moral, Georgios Athanasiadis
A survey of sub-Saharan gene flow into the Mediterranean at risk loci for coronary artery disease.
Eur. J. Hum. Genet.: 2017, 25(4);472-476
[PubMed:28098150] (I p)

Fernando Racimo, David Gokhman, Matteo Fumagalli, Amy Ko, Torben Hansen, Ida Moltke, Anders Albrechtsen, Liran Carmel, Emilia Huerta-Sánchez, Rasmus Nielsen
Archaic Adaptive Introgression in TBX15/WARS2.
Mol. Biol. Evol.: 2017, 34(3);509-524
[PubMed:28007980] (I p)

Casper-Emil T Pedersen, Kirk E Lohmueller, Niels Grarup, Peter Bjerregaard, Torben Hansen, Hans R Siegismund, Ida Moltke, Anders Albrechtsen
The Effect of an Extreme and Prolonged Population Bottleneck on Patterns of Deleterious Variation: Insights from the Greenlandic Inuit.
Genetics: 2017, 205(2);787-801
[PubMed:27903613] (I p)

Maria Rossing, Anders Albrechtsen, Anne-Bine Skytte, Uffe B Jensen, Lilian B Ousager, Anne-Marie Gerdes, Finn C Nielsen, Thomas vO Hansen
Genetic screening of the FLCN gene identify six novel variants and a Danish founder mutation.
J. Hum. Genet.: 2017, 62(2);151-157
[PubMed:27734835] (I p)

Ângela M Ribeiro, Andrew D Foote, Anne Kupczok, Bárbara Frazão, Morten T Limborg, Rosalía Piñeiro, Samuel Abalde, Sara Rocha, Rute R da Fonseca
Marine genomics: News and views.
Mar Genomics: 2017, 31;1-8
[PubMed:27650377] (I p)


2016

Casper-Emil T Pedersen, Kirk E Lohmueller, Niels Grarup, Peter Bjerregaard, Torben Hansen, Hans R Siegismund, Ida Moltke, Anders Albrechtsen
The Effect of an Extreme and Prolonged Population Bottleneck on Patterns of Deleterious Variation: Insights from the Greenlandic Inuit.
Genetics: 2017, 205(2);787-801
[PubMed:27903613] (I p)

Marc de Manuel, Martin Kuhlwilm, Peter Frandsen, Vitor C Sousa, Tariq Desai, Javier Prado-Martinez, Jessica Hernandez-Rodriguez, Isabelle Dupanloup, Oscar Lao, Pille Hallast, Joshua M Schmidt, José María Heredia-Genestar, Andrea Benazzo, Guido Barbujani, Benjamin M Peter, Lukas F K Kuderna, Ferran Casals, Samuel Angedakin, Mimi Arandjelovic, Christophe Boesch, Hjalmar Kühl, Linda Vigilant, Kevin Langergraber, John Novembre, Marta Gut, Ivo Gut, Arcadi Navarro, Frands Carlsen, Aida M Andrés, Hans R Siegismund, Aylwyn Scally, Laurent Excoffier, Chris Tyler-Smith, Sergi Castellano, Yali Xue, Christina Hvilsom, Tomas Marques-Bonet
Chimpanzee genomic diversity reveals ancient admixture with bonobos.
Science: 2016, 354(6311);477-481
[PubMed:27789843] (I p)

Maria Rossing, Anders Albrechtsen, Anne-Bine Skytte, Uffe B Jensen, Lilian B Ousager, Anne-Marie Gerdes, Finn C Nielsen, Thomas vO Hansen
Genetic screening of the FLCN gene identify six novel variants and a Danish founder mutation.
J. Hum. Genet.: 2017, 62(2);151-157
[PubMed:27734835] (I p)

Anna-Sapfo Malaspinas, Michael C Westaway, Craig Muller, Vitor C Sousa, Oscar Lao, Isabel Alves, Anders Bergström, Georgios Athanasiadis, Jade Y Cheng, Jacob E Crawford, Tim H Heupink, Enrico Macholdt, Stephan Peischl, Simon Rasmussen, Stephan Schiffels, Sankar Subramanian, Joanne L Wright, Anders Albrechtsen, Chiara Barbieri, Isabelle Dupanloup, Anders Eriksson, Ashot Margaryan, Ida Moltke, Irina Pugach, Thorfinn S Korneliussen, Ivan P Levkivskyi, J Víctor Moreno-Mayar, Shengyu Ni, Fernando Racimo, Martin Sikora, Yali Xue, Farhang A Aghakhanian, Nicolas Brucato, Søren Brunak, Paula F Campos, Warren Clark, Sturla Ellingvåg, Gudjugudju Fourmile, Pascale Gerbault, Darren Injie, George Koki, Matthew Leavesley, Betty Logan, Aubrey Lynch, Elizabeth A Matisoo-Smith, Peter J McAllister, Alexander J Mentzer, Mait Metspalu, Andrea B Migliano, Les Murgha, Maude E Phipps, William Pomat, Doc Reynolds, Francois-Xavier Ricaut, Peter Siba, Mark G Thomas, Thomas Wales, Colleen Ma'run Wall, Stephen J Oppenheimer, Chris Tyler-Smith, Richard Durbin, Joe Dortch, Andrea Manica, Mikkel H Schierup, Robert A Foley, Marta Mirazón Lahr, Claire Bowern, Jeffrey D Wall, Thomas Mailund, Mark Stoneking, Rasmus Nielsen, Manjinder S Sandhu, Laurent Excoffier, David M Lambert, Eske Willerslev
A genomic history of Aboriginal Australia.
Nature: 2016, 538(7624);207-214
[PubMed:27654914] (I p)

Ângela M Ribeiro, Andrew D Foote, Anne Kupczok, Bárbara Frazão, Morten T Limborg, Rosalía Piñeiro, Samuel Abalde, Sara Rocha, Rute R da Fonseca
Marine genomics: News and views.
Mar Genomics: 2017, 31;1-8
[PubMed:27650377] (I p)

Brooke L Whitelaw, Jan M Strugnell, Pierre Faou, Rute R da Fonseca, Nathan E Hall, Mark Norman, Julian Finn, Ira R Cooke
Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus.
J. Proteome Res.: 2016, 15(9);3284-97
[PubMed:27427999] (I p)

Mette Korre Andersen, Emil Jørsboe, Camilla Helene Sandholt, Niels Grarup, Marit Eika Jørgensen, Nils Joakim Færgeman, Peter Bjerregaard, Oluf Pedersen, Ida Moltke, Torben Hansen, Anders Albrechtsen
Identification of Novel Genetic Determinants of Erythrocyte Membrane Fatty Acid Composition among Greenlanders.
PLoS Genet.: 2016, 12(6);e1006119
[PubMed:27341449] (I e)

Mette Korre Andersen, Casper-Emil Tingskov Pedersen, Ida Moltke, Torben Hansen, Anders Albrechtsen, Niels Grarup
Genetics of Type 2 Diabetes: the Power of Isolated Populations.
Curr. Diab. Rep.: 2016, 16(7);65
[PubMed:27189761] (I p)

Rute R da Fonseca, Anders Albrechtsen, Gonçalo Espregueira Themudo, Jazmín Ramos-Madrigal, Jonas Andreas Sibbesen, Lasse Maretty, M Lisandra Zepeda-Mendoza, Paula F Campos, Rasmus Heller, Ricardo J Pereira
Next-generation biology: Sequencing and data analysis approaches for non-model organisms.
Mar Genomics: 2016, 30;3-13
[PubMed:27184710] (I p)

Filipe G Vieira, Anders Albrechtsen, Rasmus Nielsen
Estimating IBD tracts from low coverage NGS data.
Bioinformatics: 2016, 32(14);2096-102
[PubMed:27153648] (I p)

Niels Grarup, Ida Moltke, Anders Albrechtsen, Torben Hansen
Diabetes in Population Isolates: Lessons from Greenland.
Rev Diabet Stud: 2016, 12(3-4);320-9
[PubMed:27111118] (I p)

Gardar Sveinbjornsson, Anders Albrechtsen, Florian Zink, Sigurjón A Gudjonsson, Asmundur Oddson, Gísli Másson, Hilma Holm, Augustine Kong, Unnur Thorsteinsdottir, Patrick Sulem, Daniel F Gudbjartsson, Kari Stefansson
Weighting sequence variants based on their annotation increases power of whole-genome association studies.
Nat. Genet.: 2016, 48(3);314-7
[PubMed:26854916] (I p)

Moses Tefula Dhikusooka, Chrisostom Ayebazibwe, Alice Namatovu, Graham J Belsham, Hans Redlef Siegismund, Sabenzia Nabalayo Wekesa, Sheila Nina Balinda, Vincent B Muwanika, Kirsten Tjørnehøj
Unrecognized circulation of SAT 1 foot-and-mouth disease virus in cattle herds around Queen Elizabeth National Park in Uganda.
BMC Vet. Res.: 2016, 12;5
[PubMed:26739166] (I e)

Magnus W Jacobsen, Rute R da Fonseca, Louis Bernatchez, Michael M Hansen
Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.).
Mol. Phylogenet. Evol.: 2016, 95;161-70
[PubMed:26654959] (I p)


2015

Niels Grarup, Ida Moltke, Anders Albrechtsen, Torben Hansen
Diabetes in Population Isolates: Lessons from Greenland.
Rev Diabet Stud: 2016, 12(3-4);320-9
[PubMed:27111118] (I p)

Magnus W Jacobsen, Rute R da Fonseca, Louis Bernatchez, Michael M Hansen
Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.).
Mol. Phylogenet. Evol.: 2016, 95;161-70
[PubMed:26654959] (I p)

Casper-Emil T Pedersen, Peter Frandsen, Sabenzia N Wekesa, Rasmus Heller, Abraham K Sangula, Jemma Wadsworth, Nick J Knowles, Vincent B Muwanika, Hans R Siegismund
Time Clustered Sampling Can Inflate the Inferred Substitution Rate in Foot-And-Mouth Disease Virus Analyses.
PLoS ONE: 2015, 10(12);e0143605
[PubMed:26630483] (I e)

Pablo Librado, Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Hákon Jónsson, Anders Albrechtsen, Matteo Fumagalli, Melinda A Yang, Cristina Gamba, Andaine Seguin-Orlando, Cecilie D Mortensen, Bent Petersen, Cindi A Hoover, Belen Lorente-Galdos, Artem Nedoluzhko, Eugenia Boulygina, Svetlana Tsygankova, Markus Neuditschko, Vidhya Jagannathan, Catherine Thèves, Ahmed H Alfarhan, Saleh A Alquraishi, Khaled A S Al-Rasheid, Thomas Sicheritz-Ponten, Ruslan Popov, Semyon Grigoriev, Anatoly N Alekseev, Edward M Rubin, Molly McCue, Stefan Rieder, Tosso Leeb, Alexei Tikhonov, Eric Crubézy, Montgomery Slatkin, Tomas Marques-Bonet, Rasmus Nielsen, Eske Willerslev, Juha Kantanen, Egor Prokhortchouk, Ludovic Orlando
Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.
Proc. Natl. Acad. Sci. U.S.A.: 2015, 112(50);E6889-97
[PubMed:26598656] (I p)

Samrat Mondol, Ida Moltke, John Hart, Michael Keigwin, Lisa Brown, Matthew Stephens, Samuel K Wasser
New evidence for hybrid zones of forest and savanna elephants in Central and West Africa.
Mol. Ecol.: 2015, 24(24);6134-47
[PubMed:26577954] (I p)

Shzeena Dad, Nanna D Rendtorff, Erik Kann, Anders Albrechtsen, Mana M Mehrjouy, Mads Bak, Niels Tommerup, Lisbeth Tranebjærg, Thomas Rosenberg, Hanne Jensen, Lisbeth B Møller
Partial USH2A deletions contribute to Usher syndrome in Denmark.
Eur. J. Hum. Genet.: 2015, 23(12);1750
[PubMed:26559128] (I p)

Clio Der Sarkissian, Luca Ermini, Mikkel Schubert, Melinda A Yang, Pablo Librado, Matteo Fumagalli, Hákon Jónsson, Gila Kahila Bar-Gal, Anders Albrechtsen, Filipe G Vieira, Bent Petersen, Aurélien Ginolhac, Andaine Seguin-Orlando, Kim Magnussen, Antoine Fages, Cristina Gamba, Belen Lorente-Galdos, Sagi Polani, Cynthia Steiner, Markus Neuditschko, Vidhya Jagannathan, Claudia Feh, Charles L Greenblatt, Arne Ludwig, Natalia I Abramson, Waltraut Zimmermann, Renate Schafberg, Alexei Tikhonov, Thomas Sicheritz-Ponten, Eske Willerslev, Tomas Marques-Bonet, Oliver A Ryder, Molly McCue, Stefan Rieder, Tosso Leeb, Montgomery Slatkin, Ludovic Orlando
Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse.
Curr. Biol.: 2015, 25(19);2577-83
[PubMed:26412128] (I p)

Matteo Fumagalli, Ida Moltke, Niels Grarup, Fernando Racimo, Peter Bjerregaard, Marit E Jørgensen, Thorfinn S Korneliussen, Pascale Gerbault, Line Skotte, Allan Linneberg, Cramer Christensen, Ivan Brandslund, Torben Jørgensen, Emilia Huerta-Sánchez, Erik B Schmidt, Oluf Pedersen, Torben Hansen, Anders Albrechtsen, Rasmus Nielsen
Greenlandic Inuit show genetic signatures of diet and climate adaptation.
Science: 2015, 349(6254);1343-7
[PubMed:26383953] (I p)

Catarina C Azevedo, Remédios Guzmán-Guillén, José C Martins, Hugo Osório, Vitor Vasconcelos, Rute R da Fonseca, Alexandre Campos
Proteomic profiling of gill GSTs in Mytilus galloprovincialis from the North of Portugal and Galicia evidences variations at protein isoform level with a possible relation with water quality.
Mar. Environ. Res.: 2015, 110;152-61
[PubMed:26364681] (I p)

Alexandre Campos, Itxaso Apraiz, Rute R da Fonseca, Susana Cristobal
Shotgun analysis of the marine mussel Mytilus edulis hemolymph proteome and mapping the innate immunity elements.
Proteomics: 2015, 15(23-24);4021-9
[PubMed:26351202] (I p)

Thorfinn Sand Korneliussen, Ida Moltke
NgsRelate: a software tool for estimating pairwise relatedness from next-generation sequencing data.
Bioinformatics: 2015, 31(24);4009-11
[PubMed:26323718] (I p)

Maanasa Raghavan, Matthias Steinrücken, Kelley Harris, Stephan Schiffels, Simon Rasmussen, Michael DeGiorgio, Anders Albrechtsen, Cristina Valdiosera, María C Ávila-Arcos, Anna-Sapfo Malaspinas, Anders Eriksson, Ida Moltke, Mait Metspalu, Julian R Homburger, Jeff Wall, Omar E Cornejo, J Víctor Moreno-Mayar, Thorfinn S Korneliussen, Tracey Pierre, Morten Rasmussen, Paula F Campos, Peter de Barros Damgaard, Morten E Allentoft, John Lindo, Ene Metspalu, Ricardo Rodríguez-Varela, Josefina Mansilla, Celeste Henrickson, Andaine Seguin-Orlando, Helena Malmström, Thomas Stafford, Suyash S Shringarpure, Andrés Moreno-Estrada, Monika Karmin, Kristiina Tambets, Anders Bergström, Yali Xue, Vera Warmuth, Andrew D Friend, Joy Singarayer, Paul Valdes, Francois Balloux, Ilán Leboreiro, Jose Luis Vera, Hector Rangel-Villalobos, Davide Pettener, Donata Luiselli, Loren G Davis, Evelyne Heyer, Christoph P E Zollikofer, Marcia S Ponce de León, Colin I Smith, Vaughan Grimes, Kelly-Anne Pike, Michael Deal, Benjamin T Fuller, Bernardo Arriaza, Vivien Standen, Maria F Luz, Francois Ricaut, Niede Guidon, Ludmila Osipova, Mikhail I Voevoda, Olga L Posukh, Oleg Balanovsky, Maria Lavryashina, Yuri Bogunov, Elza Khusnutdinova, Marina Gubina, Elena Balanovska, Sardana Fedorova, Sergey Litvinov, Boris Malyarchuk, Miroslava Derenko, M J Mosher, David Archer, Jerome Cybulski, Barbara Petzelt, Joycelynn Mitchell, Rosita Worl, Paul J Norman, Peter Parham, Brian M Kemp, Toomas Kivisild, Chris Tyler-Smith, Manjinder S Sandhu, Michael Crawford, Richard Villems, David Glenn Smith, Michael R Waters, Ted Goebel, John R Johnson, Ripan S Malhi, Mattias Jakobsson, David J Meltzer, Andrea Manica, Richard Durbin, Carlos D Bustamante, Yun S Song, Rasmus Nielsen, Eske Willerslev
POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.
Science: 2015, 349(6250);aab3884
[PubMed:26198033] (I p)

Ângela M Ribeiro, M Lisandra Zepeda-Mendoza, Mads F Bertelsen, Annemarie T Kristensen, Erich D Jarvis, M Thomas P Gilbert, Rute R da Fonseca
A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis.
BMC Evol. Biol.: 2015, 15;124
[PubMed:26123414] (I e)

Morten Rasmussen, Martin Sikora, Anders Albrechtsen, Thorfinn Sand Korneliussen, J Víctor Moreno-Mayar, G David Poznik, Christoph P E Zollikofer, Marcia Ponce de León, Morten E Allentoft, Ida Moltke, Hákon Jónsson, Cristina Valdiosera, Ripan S Malhi, Ludovic Orlando, Carlos D Bustamante, Thomas W Stafford, David J Meltzer, Rasmus Nielsen, Eske Willerslev
The ancestry and affiliations of Kennewick Man.
Nature: 2015, 523(7561);455-458
[PubMed:26087396] (I p)

M E Allentoft, R Heller, R N Holdaway, M Bunce
Ancient DNA microsatellite analyses of the extinct New Zealand giant moa (Dinornis robustus) identify relatives within a single fossil site.
Heredity (Edinb): 2015, 115(6);481-7
[PubMed:26039408] (I p)

Yali Xue, Javier Prado-Martinez, Peter H Sudmant, Vagheesh Narasimhan, Qasim Ayub, Michal Szpak, Peter Frandsen, Yuan Chen, Bryndis Yngvadottir, David N Cooper, Marc de Manuel, Jessica Hernandez-Rodriguez, Irene Lobon, Hans R Siegismund, Luca Pagani, Michael A Quail, Christina Hvilsom, Antoine Mudakikwa, Evan E Eichler, Michael R Cranfield, Tomas Marques-Bonet, Chris Tyler-Smith, Aylwyn Scally
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding.
Science: 2015, 348(6231);242-245
[PubMed:25859046] (I p)

Thomas Bataillon, Jinjie Duan, Christina Hvilsom, Xin Jin, Yingrui Li, Laurits Skov, Sylvain Glemin, Kasper Munch, Tao Jiang, Yu Qian, Asger Hobolth, Jun Wang, Thomas Mailund, Hans R Siegismund, Mikkel H Schierup
Inference of purifying and positive selection in three subspecies of chimpanzees (Pan troglodytes) from exome sequencing.
Genome Biol Evol: 2015, 7(4);1122-32
[PubMed:25829516] (I e)

Céline Stoffel, Christophe Dufresnes, John B A Okello, Christian Noirard, Pierre Joly, Silvester Nyakaana, Vincent B Muwanika, Nicolas Alcala, Séverine Vuilleumier, Hans R Siegismund, Luca Fumagalli
Genetic consequences of population expansions and contractions in the common hippopotamus (Hippopotamus amphibius) since the Late Pleistocene.
Mol. Ecol.: 2015, 24(10);2507-20
[PubMed:25827243] (I p)

Shzeena Dad, Nanna D Rendtorff, Erik Kann, Anders Albrechtsen, Mana M Mehrjouy, Mads Bak, Niels Tommerup, Lisbeth Tranebjærg, Thomas Rosenberg, Hanne Jensen, Lisbeth B Møller
Partial USH2A deletions contribute to Usher syndrome in Denmark.
Eur. J. Hum. Genet.: 2015, 23(12);1646-51
[PubMed:25804404] (I p)

Erich D Jarvis, Siavash Mirarab, Andre J Aberer, Bo Li, Peter Houde, Cai Li, Simon Y W Ho, Brant C Faircloth, Benoit Nabholz, Jason T Howard, Alexander Suh, Claudia C Weber, Rute R da Fonseca, Alonzo Alfaro-Núñez, Nitish Narula, Liang Liu, Dave Burt, Hans Ellegren, Scott V Edwards, Alexandros Stamatakis, David P Mindell, Joel Cracraft, Edward L Braun, Tandy Warnow, Wang Jun, M Thomas Pius Gilbert, Guojie Zhang, Avian Phylogenomics Consortium
Phylogenomic analyses data of the avian phylogenomics project.
Gigascience: 2015, 4;4
[PubMed:25741440] (I e)

Alice Namatovu, Kirsten Tjørnehøj, Graham J Belsham, Moses T Dhikusooka, Sabenzia N Wekesa, Vincent B Muwanika, Hans R Siegismund, Chrisostom Ayebazibwe
Characterization of foot-and-mouth disease viruses (FMDVs) from Ugandan cattle outbreaks during 2012-2013: evidence for circulation of multiple serotypes.
PLoS ONE: 2015, 10(2);e0114811
[PubMed:25664876] (I e)

Sabenzia Nabalayo Wekesa, Abraham Kiprotich Sangula, Graham J Belsham, Kirsten Tjornehoj, Vincent B Muwanika, Francis Gakuya, Dominic Mijele, Hans Redlef Siegismund
Characterisation of recent foot-and-mouth disease viruses from African buffalo (Syncerus caffer) and cattle in Kenya is consistent with independent virus populations.
BMC Vet. Res.: 2015, 11;17
[PubMed:25644407] (I e)

Ida Moltke, Matteo Fumagalli, Thorfinn S Korneliussen, Jacob E Crawford, Peter Bjerregaard, Marit E Jørgensen, Niels Grarup, Hans Christian Gulløv, Allan Linneberg, Oluf Pedersen, Torben Hansen, Rasmus Nielsen, Anders Albrechtsen
Uncovering the genetic history of the present-day Greenlandic population.
Am. J. Hum. Genet.: 2015, 96(1);54-69
[PubMed:25557782] (I p)

Rute R da Fonseca, Bruce D Smith, Nathan Wales, Enrico Cappellini, Pontus Skoglund, Matteo Fumagalli, José Alfredo Samaniego, Christian Carøe, María C Ávila-Arcos, David E Hufnagel, Thorfinn Sand Korneliussen, Filipe Garrett Vieira, Mattias Jakobsson, Bernardo Arriaza, Eske Willerslev, Rasmus Nielsen, Matthew B Hufford, Anders Albrechtsen, Jeffrey Ross-Ibarra, M Thomas P Gilbert
The origin and evolution of maize in the Southwestern United States.
Nat Plants: 2015, 1;14003
[PubMed:27246050] (I e)

Julie H Laursen, Helle Bach Søndergaard, Anders Albrechtsen, Ruth Frikke-Schmidt, Nils Koch-Henriksen, Per Soelberg Sørensen, Finn Sellebjerg, Annette Oturai
Genetic and environmental determinants of 25-hydroxyvitamin D levels in multiple sclerosis.
Mult. Scler.: 2015, 21(11);1414-22
[PubMed:25533295] (I p)

Moses Tefula Dhikusooka, Kirsten Tjørnehøj, Chrisostom Ayebazibwe, Alice Namatovu, Simon Ruhweza, Hans Redlef Siegismund, Sabenzia Nabalayo Wekesa, Preben Normann, Graham J Belsham
Foot-and-mouth disease virus serotype SAT 3 in long-horned Ankole calf, Uganda.
Emerging Infect. Dis.: 2015, 21(1);111-4
[PubMed:25531186] (I p)

A Namatovu, G J Belsham, C Ayebazibwe, M T Dhikusooka, S N Wekesa, H R Siegismund, V B Muwanika, K Tjørnehøj
Challenges for Serology-Based Characterization of Foot-and-Mouth Disease Outbreaks in Endemic Areas; Identification of Two Separate Lineages of Serotype O FMDV in Uganda in 2011.
Transbound Emerg Dis: 2015, 62(5);522-34
[PubMed:24118785] (I p)

S N Wekesa, V B Muwanika, H R Siegismund, A K Sangula, A Namatovu, M T Dhikusooka, K Tjørnehøj, S N Balinda, J Wadsworth, N J Knowles, G J Belsham
Analysis of Recent Serotype O Foot-and-Mouth Disease Viruses from Livestock in Kenya: Evidence of Four Independently Evolving Lineages.
Transbound Emerg Dis: 2015, 62(3);305-14
[PubMed:23931583] (I p)


2014

Ida Moltke, Matteo Fumagalli, Thorfinn S Korneliussen, Jacob E Crawford, Peter Bjerregaard, Marit E Jørgensen, Niels Grarup, Hans Christian Gulløv, Allan Linneberg, Oluf Pedersen, Torben Hansen, Rasmus Nielsen, Anders Albrechtsen
Uncovering the genetic history of the present-day Greenlandic population.
Am. J. Hum. Genet.: 2015, 96(1);54-69
[PubMed:25557782] (I p)

Julie H Laursen, Helle Bach Søndergaard, Anders Albrechtsen, Ruth Frikke-Schmidt, Nils Koch-Henriksen, Per Soelberg Sørensen, Finn Sellebjerg, Annette Oturai
Genetic and environmental determinants of 25-hydroxyvitamin D levels in multiple sclerosis.
Mult. Scler.: 2015, 21(11);1414-22
[PubMed:25533295] (I p)

Mikkel Schubert, Hákon Jónsson, Dan Chang, Clio Der Sarkissian, Luca Ermini, Aurélien Ginolhac, Anders Albrechtsen, Isabelle Dupanloup, Adrien Foucal, Bent Petersen, Matteo Fumagalli, Maanasa Raghavan, Andaine Seguin-Orlando, Thorfinn S Korneliussen, Amhed M V Velazquez, Jesper Stenderup, Cindi A Hoover, Carl-Johan Rubin, Ahmed H Alfarhan, Saleh A Alquraishi, Khaled A S Al-Rasheid, David E MacHugh, Ted Kalbfleisch, James N MacLeod, Edward M Rubin, Thomas Sicheritz-Ponten, Leif Andersson, Michael Hofreiter, Tomas Marques-Bonet, M Thomas P Gilbert, Rasmus Nielsen, Laurent Excoffier, Eske Willerslev, Beth Shapiro, Ludovic Orlando
Prehistoric genomes reveal the genetic foundation and cost of horse domestication.
Proc. Natl. Acad. Sci. U.S.A.: 2014, 111(52);E5661-9
[PubMed:25512547] (I p)

Erich D Jarvis, Siavash Mirarab, Andre J Aberer, Bo Li, Peter Houde, Cai Li, Simon Y W Ho, Brant C Faircloth, Benoit Nabholz, Jason T Howard, Alexander Suh, Claudia C Weber, Rute R da Fonseca, Jianwen Li, Fang Zhang, Hui Li, Long Zhou, Nitish Narula, Liang Liu, Ganesh Ganapathy, Bastien Boussau, Md Shamsuzzoha Bayzid, Volodymyr Zavidovych, Sankar Subramanian, Toni Gabaldón, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Bhanu Rekepalli, Kasper Munch, Mikkel Schierup, Bent Lindow, Wesley C Warren, David Ray, Richard E Green, Michael W Bruford, Xiangjiang Zhan, Andrew Dixon, Shengbin Li, Ning Li, Yinhua Huang, Elizabeth P Derryberry, Mads Frost Bertelsen, Frederick H Sheldon, Robb T Brumfield, Claudio V Mello, Peter V Lovell, Morgan Wirthlin, Maria Paula Cruz Schneider, Francisco Prosdocimi, José Alfredo Samaniego, Amhed Missael Vargas Velazquez, Alonzo Alfaro-Núñez, Paula F Campos, Bent Petersen, Thomas Sicheritz-Ponten, An Pas, Tom Bailey, Paul Scofield, Michael Bunce, David M Lambert, Qi Zhou, Polina Perelman, Amy C Driskell, Beth Shapiro, Zijun Xiong, Yongli Zeng, Shiping Liu, Zhenyu Li, Binghang Liu, Kui Wu, Jin Xiao, Xiong Yinqi, Qiuemei Zheng, Yong Zhang, Huanming Yang, Jian Wang, Linnea Smeds, Frank E Rheindt, Michael Braun, Jon Fjeldsa, Ludovic Orlando, F Keith Barker, Knud Andreas Jønsson, Warren Johnson, Klaus-Peter Koepfli, Stephen O'Brien, David Haussler, Oliver A Ryder, Carsten Rahbek, Eske Willerslev, Gary R Graves, Travis C Glenn, John McCormack, Dave Burt, Hans Ellegren, Per Alström, Scott V Edwards, Alexandros Stamatakis, David P Mindell, Joel Cracraft, Edward L Braun, Tandy Warnow, Wang Jun, M Thomas P Gilbert, Guojie Zhang
Whole-genome analyses resolve early branches in the tree of life of modern birds.
Science: 2014, 346(6215);1320-31
[PubMed:25504713] (I p)

Guojie Zhang, Cai Li, Qiye Li, Bo Li, Denis M Larkin, Chul Lee, Jay F Storz, Agostinho Antunes, Matthew J Greenwold, Robert W Meredith, Anders Ödeen, Jie Cui, Qi Zhou, Luohao Xu, Hailin Pan, Zongji Wang, Lijun Jin, Pei Zhang, Haofu Hu, Wei Yang, Jiang Hu, Jin Xiao, Zhikai Yang, Yang Liu, Qiaolin Xie, Hao Yu, Jinmin Lian, Ping Wen, Fang Zhang, Hui Li, Yongli Zeng, Zijun Xiong, Shiping Liu, Long Zhou, Zhiyong Huang, Na An, Jie Wang, Qiumei Zheng, Yingqi Xiong, Guangbiao Wang, Bo Wang, Jingjing Wang, Yu Fan, Rute R da Fonseca, Alonzo Alfaro-Núñez, Mikkel Schubert, Ludovic Orlando, Tobias Mourier, Jason T Howard, Ganeshkumar Ganapathy, Andreas Pfenning, Osceola Whitney, Miriam V Rivas, Erina Hara, Julia Smith, Marta Farré, Jitendra Narayan, Gancho Slavov, Michael N Romanov, Rui Borges, João Paulo Machado, Imran Khan, Mark S Springer, John Gatesy, Federico G Hoffmann, Juan C Opazo, Olle Håstad, Roger H Sawyer, Heebal Kim, Kyu-Won Kim, Hyeon Jeong Kim, Seoae Cho, Ning Li, Yinhua Huang, Michael W Bruford, Xiangjiang Zhan, Andrew Dixon, Mads F Bertelsen, Elizabeth Derryberry, Wesley Warren, Richard K Wilson, Shengbin Li, David A Ray, Richard E Green, Stephen J O'Brien, Darren Griffin, Warren E Johnson, David Haussler, Oliver A Ryder, Eske Willerslev, Gary R Graves, Per Alström, Jon Fjeldså, David P Mindell, Scott V Edwards, Edward L Braun, Carsten Rahbek, David W Burt, Peter Houde, Yong Zhang, Huanming Yang, Jian Wang, Avian Genome Consortium, Erich D Jarvis, M Thomas P Gilbert, Jun Wang
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science: 2014, 346(6215);1311-20
[PubMed:25504712] (I p)

Anna-Sapfo Malaspinas, Oscar Lao, Hannes Schroeder, Morten Rasmussen, Maanasa Raghavan, Ida Moltke, Paula F Campos, Francisca Santana Sagredo, Simon Rasmussen, Vanessa F Gonçalves, Anders Albrechtsen, Morten E Allentoft, Philip L F Johnson, Mingkun Li, Silvia Reis, Danilo V Bernardo, Michael DeGiorgio, Ana T Duggan, Murilo Bastos, Yong Wang, Jesper Stenderup, J Victor Moreno-Mayar, Søren Brunak, Thomas Sicheritz-Ponten, Emily Hodges, Gregory J Hannon, Ludovic Orlando, T Douglas Price, Jeffrey D Jensen, Rasmus Nielsen, Jan Heinemeier, Jesper Olsen, Claudia Rodrigues-Carvalho, Marta Mirazón Lahr, Walter A Neves, Manfred Kayser, Thomas Higham, Mark Stoneking, Sergio D J Pena, Eske Willerslev
Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil.
Curr. Biol.: 2014, 24(21);R1035-7
[PubMed:25455029] (I p)

Hákon Jónsson, Mikkel Schubert, Andaine Seguin-Orlando, Aurélien Ginolhac, Lillian Petersen, Matteo Fumagalli, Anders Albrechtsen, Bent Petersen, Thorfinn S Korneliussen, Julia T Vilstrup, Teri Lear, Jennifer Leigh Myka, Judith Lundquist, Donald C Miller, Ahmed H Alfarhan, Saleh A Alquraishi, Khaled A S Al-Rasheid, Julia Stagegaard, Günter Strauss, Mads Frost Bertelsen, Thomas Sicheritz-Ponten, Douglas F Antczak, Ernest Bailey, Rasmus Nielsen, Eske Willerslev, Ludovic Orlando
Speciation with gene flow in equids despite extensive chromosomal plasticity.
Proc. Natl. Acad. Sci. U.S.A.: 2014, 111(52);18655-60
[PubMed:25453089] (I p)

Thorfinn Sand Korneliussen, Anders Albrechtsen, Rasmus Nielsen
ANGSD: Analysis of Next Generation Sequencing Data.
BMC Bioinformatics: 2014, 15;356
[PubMed:25420514] (I e)

Marie Lisandra Zepeda Mendoza, Sanne Nygaard, Rute R da Fonseca
DivA: detection of non-homologous and very divergent regions in protein sequence alignments.
BMC Res Notes: 2014, 7;806
[PubMed:25403086] (I e)

Andaine Seguin-Orlando, Thorfinn S Korneliussen, Martin Sikora, Anna-Sapfo Malaspinas, Andrea Manica, Ida Moltke, Anders Albrechtsen, Amy Ko, Ashot Margaryan, Vyacheslav Moiseyev, Ted Goebel, Michael Westaway, David Lambert, Valeri Khartanovich, Jeffrey D Wall, Philip R Nigst, Robert A Foley, Marta Mirazon Lahr, Rasmus Nielsen, Ludovic Orlando, Eske Willerslev
Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years.
Science: 2014, 346(6213);1113-8
[PubMed:25378462] (I p)

Maanasa Raghavan, Michael DeGiorgio, Anders Albrechtsen, Ida Moltke, Pontus Skoglund, Thorfinn S Korneliussen, Bjarne Grønnow, Martin Appelt, Hans Christian Gulløv, T Max Friesen, William Fitzhugh, Helena Malmström, Simon Rasmussen, Jesper Olsen, Linea Melchior, Benjamin T Fuller, Simon M Fahrni, Thomas Stafford, Vaughan Grimes, M A Priscilla Renouf, Jerome Cybulski, Niels Lynnerup, Marta Mirazon Lahr, Kate Britton, Rick Knecht, Jette Arneborg, Mait Metspalu, Omar E Cornejo, Anna-Sapfo Malaspinas, Yong Wang, Morten Rasmussen, Vibha Raghavan, Thomas V O Hansen, Elza Khusnutdinova, Tracey Pierre, Kirill Dneprovsky, Claus Andreasen, Hans Lange, M Geoffrey Hayes, Joan Coltrain, Victor A Spitsyn, Anders Götherström, Ludovic Orlando, Toomas Kivisild, Richard Villems, Michael H Crawford, Finn C Nielsen, Jørgen Dissing, Jan Heinemeier, Morten Meldgaard, Carlos Bustamante, Dennis H O'Rourke, Mattias Jakobsson, M Thomas P Gilbert, Rasmus Nielsen, Eske Willerslev
The genetic prehistory of the New World Arctic.
Science: 2014, 345(6200);1255832
[PubMed:25170159] (I p)

Ida Moltke, Niels Grarup, Marit E Jørgensen, Peter Bjerregaard, Jonas T Treebak, Matteo Fumagalli, Thorfinn S Korneliussen, Marianne A Andersen, Thomas S Nielsen, Nikolaj T Krarup, Anette P Gjesing, Juleen R Zierath, Allan Linneberg, Xueli Wu, Guangqing Sun, Xin Jin, Jumana Al-Aama, Jun Wang, Knut Borch-Johnsen, Oluf Pedersen, Rasmus Nielsen, Anders Albrechtsen, Torben Hansen
A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes.
Nature: 2014, 512(7513);190-3
[PubMed:25043022] (I p)

Rasmus Heller, Peter Frandsen, Eline Deirdre Lorenzen, Hans R Siegismund
Is diagnosability an indicator of speciation? Response to "Why one century of phenetics is enough".
Syst. Biol.: 2014, 63(5);833-7
[PubMed:24831669] (I p)

José Melo-Ferreira, Joana Vilela, Miguel M Fonseca, Rute R da Fonseca, Pierre Boursot, Paulo C Alves
The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression.
Genome Biol Evol: 2014, 6(4);886-96
[PubMed:24696399] (I p)

Morten Erik Allentoft, Rasmus Heller, Charlotte L Oskam, Eline D Lorenzen, Marie L Hale, M Thomas P Gilbert, Christopher Jacomb, Richard N Holdaway, Michael Bunce
Extinct New Zealand megafauna were not in decline before human colonization.
Proc. Natl. Acad. Sci. U.S.A.: 2014, 111(13);4922-7
[PubMed:24639531] (I p)

Morten Rasmussen, Sarah L Anzick, Michael R Waters, Pontus Skoglund, Michael DeGiorgio, Thomas W Stafford, Simon Rasmussen, Ida Moltke, Anders Albrechtsen, Shane M Doyle, G David Poznik, Valborg Gudmundsdottir, Rachita Yadav, Anna-Sapfo Malaspinas, Samuel Stockton White, Morten E Allentoft, Omar E Cornejo, Kristiina Tambets, Anders Eriksson, Peter D Heintzman, Monika Karmin, Thorfinn Sand Korneliussen, David J Meltzer, Tracey L Pierre, Jesper Stenderup, Lauri Saag, Vera M Warmuth, Margarida C Lopes, Ripan S Malhi, Søren Brunak, Thomas Sicheritz-Ponten, Ian Barnes, Matthew Collins, Ludovic Orlando, Francois Balloux, Andrea Manica, Ramneek Gupta, Mait Metspalu, Carlos D Bustamante, Mattias Jakobsson, Rasmus Nielsen, Eske Willerslev
The genome of a Late Pleistocene human from a Clovis burial site in western Montana.
Nature: 2014, 506(7487);225-9
[PubMed:24522598] (I p)

Shengting Li, Soren Besenbacher, Yingrui Li, Karsten Kristiansen, Niels Grarup, Anders Albrechtsen, Thomas Sparsø, Thorfinn Korneliussen, Torben Hansen, Jun Wang, Rasmus Nielsen, Oluf Pedersen, Lars Bolund, Mikkel H Schierup
Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population.
Eur. J. Hum. Genet.: 2014, 22(8);1040-5
[PubMed:24448545] (I p)

Morten T Olsen, Liselotte W Andersen, Rune Dietz, Jonas Teilmann, Tero Härkönen, Hans R Siegismund
Integrating genetic data and population viability analyses for the identification of harbour seal (Phoca vitulina) populations and management units.
Mol. Ecol.: 2014, 23(4);815-31
[PubMed:24382213] (I p)

Sabenzia N Wekesa, Abraham K Sangula, Graham J Belsham, Vincent B Muwanika, Rasmus Heller, Sheila N Balinda, Charles Masembe, Hans R Siegismund
Genetic diversity of serotype A foot-and-mouth disease viruses in Kenya from 1964 to 2013; implications for control strategies in eastern Africa.
Infect. Genet. Evol.: 2014, 21;408-17
[PubMed:24368254] (I p)

Maanasa Raghavan, Pontus Skoglund, Kelly E Graf, Mait Metspalu, Anders Albrechtsen, Ida Moltke, Simon Rasmussen, Thomas W Stafford, Ludovic Orlando, Ene Metspalu, Monika Karmin, Kristiina Tambets, Siiri Rootsi, Reedik Mägi, Paula F Campos, Elena Balanovska, Oleg Balanovsky, Elza Khusnutdinova, Sergey Litvinov, Ludmila P Osipova, Sardana A Fedorova, Mikhail I Voevoda, Michael DeGiorgio, Thomas Sicheritz-Ponten, Søren Brunak, Svetlana Demeshchenko, Toomas Kivisild, Richard Villems, Rasmus Nielsen, Mattias Jakobsson, Eske Willerslev
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans.
Nature: 2014, 505(7481);87-91
[PubMed:24256729] (I p)

Ida Moltke, Anders Albrechtsen
RelateAdmix: a software tool for estimating relatedness between admixed individuals.
Bioinformatics: 2014, 30(7);1027-8
[PubMed:24215025] (I p)

Christina Hvilsom, Frands Carlsen, Rasmus Heller, Nina Jaffré, Hans R Siegismund
Contrasting demographic histories of the neighboring bonobo and chimpanzee.
Primates: 2014, 55(1);101-12
[PubMed:23982179] (I p)