Publications

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2022

Anne Cathrine Baun Thuesen, Frederik Filip Stæger, Alba Kaci, Marie Holm Solheim, Ingvild Aukrust, Emil Jørsboe, Cindy G Santander, Mette K Andersen, Zilong Li, Arthur Gilly, Sara Elizabeth Stinson, Anette Prior Gjesing, Peter Bjerregaard, Michael Lynge Pedersen, Christina Viskum Lytken Larsen, Niels Grarup, Marit E Jørgensen, Eleftheria Zeggini, Lise Bjørkhaug, Pål Rasmus Njølstad, Anders Albrechtsen, Ida Moltke, Torben Hansen

Lancet Reg Health Eur: 2023, 24;100529
[PubMed:36649380] (I e)

Lei Chen, Zihe Li, Baosheng Wu, Botong Zhou, Rasmus Heller, Jiong Zhou, Kun Wang, Zeshan Lin, Dongdong Wu, Qiang Qiu
Progressive evolution of secondary aquatic adaptation in hippos and cetaceans.
Cell Discov: 2022, 8(1);134
[PubMed:36539412] (P e)

Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan, Limei Lin, Qian Jiang, Lei Zhang, Changzheng Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
Correction: An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants.
Microbiome: 2022, 10(1);228
[PubMed:36522795] (I e)

Xiangyu Pan, Zhaoxia Ma, Xinqi Sun, Hui Li, Tingting Zhang, Chen Zhao, Nini Wang, Rasmus Heller, Wing Hung Wong, Wen Wang, Yu Jiang, Yong Wang
CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network.
Genomics Proteomics Bioinformatics: 2022;
[PubMed:36494035] (I a)

Anne Krogh Nøhr, Annika Forsingdal, Ida Moltke, Oliver D Howes, Morana Vitezic, Anders Albrechtsen, Maria Dalby
Polygenic heterogeneity in antidepressant treatment and placebo response.
Transl Psychiatry: 2022, 12(1);456
[PubMed:36309483] (I e)

Emil Jørsboe, Mette K Andersen, Line Skotte, Frederik F Stæger, Nils J Færgeman, Kristian Hanghøj, Cindy G Santander, Ninna K Senftleber, Lars J Diaz, Maria Overvad, Ryan K Waples, Frank Geller, Peter Bjerregaard, Mads Melbye, Christina V L Larsen, Bjarke Feenstra, Anders Koch, Marit E Jørgensen, Niels Grarup, Ida Moltke, Anders Albrechtsen, Torben Hansen

HGG Adv: 2022, 3(4);100118
[PubMed:36267056] (I e)

Shyam Gopalakrishnan, S Sunna Ebenesersdóttir, Inge K C Lundstrøm, Gordon Turner-Walker, Kristjan H S Moore, Pierre Luisi, Ashot Margaryan, Michael D Martin, Martin Rene Ellegaard, Ólafur Þ Magnússon, Ásgeir Sigurðsson, Steinunn Snorradóttir, Droplaug N Magnúsdóttir, Jason E Laffoon, Lucy van Dorp, Xiaodong Liu, Ida Moltke, María C Ávila-Arcos, Joshua G Schraiber, Simon Rasmussen, David Juan, Pere Gelabert, Toni de-Dios, Anna K Fotakis, Miren Iraeta-Orbegozo, Åshild J Vågene, Sean Dexter Denham, Axel Christophersen, Hans K Stenøien, Filipe G Vieira, Shanlin Liu, Torsten Günther, Toomas Kivisild, Ole Georg Moseng, Birgitte Skar, Christina Cheung, Marcela Sandoval-Velasco, Nathan Wales, Hannes Schroeder, Paula F Campos, Valdís B Guðmundsdóttir, Thomas Sicheritz-Ponten, Bent Petersen, Jostein Halgunset, Edmund Gilbert, Gianpiero L Cavalleri, Eivind Hovig, Ingrid Kockum, Tomas Olsson, Lars Alfredsson, Thomas F Hansen, Thomas Werge, Eske Willerslev, Francois Balloux, Tomas Marques-Bonet, Carles Lalueza-Fox, Rasmus Nielsen, Kári Stefánsson, Agnar Helgason, M Thomas P Gilbert
The population genomic legacy of the second plague pandemic.
Curr Biol: 2022, 32(21);4743-4751.e6
[PubMed:36182700] (I p)

Malthe Sebro Rasmussen, Genís Garcia-Erill, Thorfinn Sand Korneliussen, Carsten Wiuf, Anders Albrechtsen
Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage.
Genetics: 2022, 222(4);
[PubMed:36173322] (I p)

Xin Sun, Marta Maria Ciucani, Jacob Agerbo Rasmussen, M Thomas P Gilbert, Mikkel-Holger S Sinding
Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species.
BMC Ecol Evol: 2022, 22(1);110
[PubMed:36127636] (I e)

Yanzhu Ji, Shaohong Feng, Lei Wu, Qi Fang, Anna Brüniche-Olsen, J Andrew DeWoody, Yalin Cheng, Dezhi Zhang, Yan Hao, Gang Song, Yanhua Qu, Alexander Suh, Guojie Zhang, Shannon J Hackett, Fumin Lei
Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds.
Sci Adv: 2022, 8(35);eabo0099
[PubMed:36044583] (I p)

Elisabetta Canteri, Stuart C Brown, Niels Martin Schmidt, Rasmus Heller, David Nogués-Bravo, Damien A Fordham
Spatiotemporal influences of climate and humans on muskox range dynamics over multiple millennia.
Glob Chang Biol: 2022, 28(22);6602-6617
[PubMed:36031712] (I p)

Tom van der Valk, Marianne Dehasque, J Camilo Chacón-Duque, Nikolay Oskolkov, Sergey Vartanyan, Peter D Heintzman, Patrícia Pečnerová, David Díez-Del-Molino, Love Dalén
Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome.
iScience: 2022, 25(8);104826
[PubMed:35992080] (I e)

J Andrew DeWoody, Jong Yoon Jeon, John W Bickham, Erangi J Heenkenda, Safia Janjua, Gina F Lamka, Andrew J Mularo, Andrew Black, Anna Brüniche-Olsen, Janna R Willoughby
The Threatened Species Imperative: Conservation assessments would benefit from population genomic insights.
Proc Natl Acad Sci U S A: 2022, 119(35);e2210685119
[PubMed:35969797] (I p)

Luise Ørsted Brandt, Alberto J Taurozzi, Meaghan Mackie, Mikkel-Holger S Sinding, Filipe Garrett Vieira, Anne Lisbeth Schmidt, Charlotte Rimstad, Matthew J Collins, Ulla Mannering
Palaeoproteomics identifies beaver fur in Danish high-status Viking Age burials - direct evidence of fur trade.
PLoS One: 2022, 17(7);e0270040
[PubMed:35895633] (I e)

Theresa L Cole, Chengran Zhou, Miaoquan Fang, Hailin Pan, Daniel T Ksepka, Steven R Fiddaman, Christopher A Emerling, Daniel B Thomas, Xupeng Bi, Qi Fang, Martin R Ellegaard, Shaohong Feng, Adrian L Smith, Tracy A Heath, Alan J D Tennyson, Pablo García Borboroglu, Jamie R Wood, Peter W Hadden, Stefanie Grosser, Charles-André Bost, Yves Cherel, Thomas Mattern, Tom Hart, Mikkel-Holger S Sinding, Lara D Shepherd, Richard A Phillips, Petra Quillfeldt, Juan F Masello, Juan L Bouzat, Peter G Ryan, David R Thompson, Ursula Ellenberg, Peter Dann, Gary Miller, P Dee Boersma, Ruoping Zhao, M Thomas P Gilbert, Huanming Yang, De-Xing Zhang, Guojie Zhang
Genomic insights into the secondary aquatic transition of penguins.
Nat Commun: 2022, 13(1);3912
[PubMed:35853876] (I e)

Yuan Yuan, Da-Ming Sun, Tao Qin, Sheng-Yong Mao, Wei-Yun Zhu, Yu-Yang Yin, Jie Huang, Rasmus Heller, Zhi-Peng Li, Jun-Hua Liu, Qiang Qiu
Single-cell transcriptomic landscape of the sheep rumen provides insights into physiological programming development and adaptation of digestive strategies.
Zool Res: 2022, 43(4);634-647
[PubMed:35838034] (I p)

Jonas Meisner, Anders Albrechtsen
Haplotype and population structure inference using neural networks in whole-genome sequencing data.
Genome Res: 2022, 32(8);1542-52
[PubMed:35794006] (I a)

Vera de Ferran, Henrique Vieira Figueiró, Fernanda de Jesus Trindade, Oliver Smith, Mikkel-Holger S Sinding, Cristine S Trinca, Gabriele Zenato Lazzari, Géraldine Veron, Juliana A Vianna, Filippo Barbanera, Sergei Kliver, Natalia Serdyukova, Tatiana Bulyonkova, Oliver A Ryder, M Thomas P Gilbert, Klaus-Peter Koepfli, Eduardo Eizirik
Phylogenomics of the world's otters.
Curr Biol: 2022, 32(16);3650-3658.e4
[PubMed:35779528] (I p)

Genís Garcia-Erill, Christian H F Jørgensen, Vincent B Muwanika, Xi Wang, Malthe S Rasmussen, Yvonne A de Jong, Philippe Gaubert, Ayodeji Olayemi, Jordi Salmona, Thomas M Butynski, Laura D Bertola, Hans R Siegismund, Anders Albrechtsen, Rasmus Heller
Warthog Genomes Resolve an Evolutionary Conundrum and Reveal Introgression of Disease Resistance Genes.
Mol Biol Evol: 2022, 39(7);
[PubMed:35779009] (I p)

Anders Bergström, David W G Stanton, Ulrike H Taron, Laurent Frantz, Mikkel-Holger S Sinding, Erik Ersmark, Saskia Pfrengle, Molly Cassatt-Johnstone, Ophélie Lebrasseur, Linus Girdland-Flink, Daniel M Fernandes, Morgane Ollivier, Leo Speidel, Shyam Gopalakrishnan, Michael V Westbury, Jazmin Ramos-Madrigal, Tatiana R Feuerborn, Ella Reiter, Joscha Gretzinger, Susanne C Münzel, Pooja Swali, Nicholas J Conard, Christian Carøe, James Haile, Anna Linderholm, Semyon Androsov, Ian Barnes, Chris Baumann, Norbert Benecke, Hervé Bocherens, Selina Brace, Ruth F Carden, Dorothée G Drucker, Sergey Fedorov, Mihály Gasparik, Mietje Germonpré, Semyon Grigoriev, Pam Groves, Stefan T Hertwig, Varvara V Ivanova, Luc Janssens, Richard P Jennings, Aleksei K Kasparov, Irina V Kirillova, Islam Kurmaniyazov, Yaroslav V Kuzmin, Pavel A Kosintsev, Martina Lázničková-Galetová, Charlotte Leduc, Pavel Nikolskiy, Marc Nussbaumer, Cóilín O'Drisceoil, Ludovic Orlando, Alan Outram, Elena Y Pavlova, Angela R Perri, Małgorzata Pilot, Vladimir V Pitulko, Valerii V Plotnikov, Albert V Protopopov, André Rehazek, Mikhail Sablin, Andaine Seguin-Orlando, Jan Storå, Christian Verjux, Victor F Zaibert, Grant Zazula, Philippe Crombé, Anders J Hansen, Eske Willerslev, Jennifer A Leonard, Anders Götherström, Ron Pinhasi, Verena J Schuenemann, Michael Hofreiter, M Thomas P Gilbert, Beth Shapiro, Greger Larson, Johannes Krause, Love Dalén, Pontus Skoglund
Grey wolf genomic history reveals a dual ancestry of dogs.
Nature: 2022, 607(7918);313-320
[PubMed:35768506] (I p)

Jan van Waaij, Zilong Li, Carsten Wiuf
Estimation of the covariance structure from SNP allele frequencies.
Stat Appl Genet Mol Biol: 2022, 21(1);
[PubMed:35634906] (I e)

Gabriele Treu, Mikkel-Holger S Sinding, Gábor Á Czirják, Rune Dietz, Thomas Gräff, Oliver Krone, Ulf Marquard-Petersen, Johan Brus Mikkelsen, Ralf Schulz, Christian Sonne, Jens Søndergaard, Jiachen Sun, Jochen Zubrod, Igor Eulaers
An assessment of mercury and its dietary drivers in fur of Arctic wolves from Greenland and High Arctic Canada.
Sci Total Environ: 2022, 838(Pt 2);156171
[PubMed:35613645] (I p)

Marianne Dehasque, Patrícia Pečnerová, Vendela Kempe Lagerholm, Erik Ersmark, Gleb K Danilov, Peter Mortensen, Sergey Vartanyan, Love Dalén
Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA.
Genes (Basel): 2022, 13(4);
[PubMed:35456493] (I e)

Christopher J A Duncan, Morten K Skouboe, Sophie Howarth, Anne K Hollensen, Rui Chen, Malene L Børresen, Benjamin J Thompson, Jarmila Stremenova Spegarova, Catherine F Hatton, Frederik F Stæger, Mette K Andersen, John Whittaker, Søren R Paludan, Sofie E Jørgensen, Martin K Thomsen, Jacob G Mikkelsen, Carsten Heilmann, Daniela Buhas, Nina F Øbro, Jakob T Bay, Hanne V Marquart, M Teresa de la Morena, Joseph A Klejka, Matthew Hirschfeld, Line Borgwardt, Isabel Forss, Tania Masmas, Anja Poulsen, Francisco Noya, Guy Rouleau, Torben Hansen, Sirui Zhou, Anders Albrechtsen, Reza Alizadehfar, Eric J Allenspach, Sophie Hambleton, Trine H Mogensen
Life-threatening viral disease in a novel form of autosomal recessive IFNAR2 deficiency in the Arctic.
J Exp Med: 2022, 219(6);
[PubMed:35442417] (I p)

Cindy Santander, Ludovica Molinaro, Giacomo Mutti, Felipe I Martínez, Jacinto Mathe, Maria Joana Ferreira da Silva, Matteo Caldon, Gonzalo Oteo-Garcia, Vera Aldeias, Will Archer, Marion Bamford, Dora Biro, René Bobe, David R Braun, Philippa Hammond, Tina Lüdecke, Maria José Pinto, Luis Meira Paulo, Marc Stalmans, Frederico Tátá Regala, Francesco Bertolini, Ida Moltke, Alessandro Raveane, Luca Pagani, Susana Carvalho, Cristian Capelli
Genomic variation in baboons from central Mozambique unveils complex evolutionary relationships with other Papio species.
BMC Ecol Evol: 2022, 22(1);44
[PubMed:35410131] (I e)

Ming Li, Congjiao Sun, Naiyi Xu, Peipei Bian, Xiaomeng Tian, Xihong Wang, Yuzhe Wang, Xinzheng Jia, Rasmus Heller, Mingshan Wang, Fei Wang, Xuelei Dai, Rongsong Luo, Yingwei Guo, Xiangnan Wang, Peng Yang, Dexiang Hu, Zhenyu Liu, Weiwei Fu, Shunjin Zhang, Xiaochang Li, Chaoliang Wen, Fangren Lan, Amam Zonaed Siddiki, Chatmongkon Suwannapoom, Xin Zhao, Qinghua Nie, Xiaoxiang Hu, Yu Jiang, Ning Yang
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions.
Mol Biol Evol: 2022, 39(4);
[PubMed:35325213] (I p)

Joana L Rocha, Pedro Vaz Pinto, Hans R Siegismund, Matthias Meyer, Bettine Jansen van Vuuren, Luís Veríssimo, Nuno Ferrand, Raquel Godinho
African climate and geomorphology drive evolution and ghost introgression in sable antelope.
Mol Ecol: 2022, 31(10);2968-2984
[PubMed:35305042] (I p)

Laura D Bertola, Susan M Miller, Vivienne L Williams, Vincent N Naude, Peter Coals, Simon G Dures, Philipp Henschel, Monica Chege, Etotépé A Sogbohossou, Arame Ndiaye, Martial Kiki, Angela Gaylard, Dennis K Ikanda, Matthew S Becker, Peter Lindsey

Evol Appl: 2022, 15(1);22-39
[PubMed:35126646] (P e)

Evelyn L Jensen, David Díez-Del-Molino, M Thomas P Gilbert, Laura D Bertola, Filipa Borges, Vlatka Cubric-Curik, Miguel de Navascués, Peter Frandsen, Myriam Heuertz, Christina Hvilsom, Belén Jiménez-Mena, Antti Miettinen, Markus Moest, Patrícia Pečnerová, Ian Barnes, Cristiano Vernesi
Ancient and historical DNA in conservation policy.
Trends Ecol Evol: 2022, 37(5);420-429
[PubMed:35086740] (I p)

Xiaodong Liu, Suzanne Rønhøj Schjøtt, Sandra M Granquist, Aqqalu Rosing-Asvid, Rune Dietz, Jonas Teilmann, Anders Galatius, Kristina Cammen, Greg O'Corry-Crowe, Karin Harding, Tero Härkönen, Ailsa Hall, Emma L Carroll, Yumi Kobayashi, Mike Hammill, Garry Stenson, Anne Kirstine Frie, Christian Lydersen, Kit M Kovacs, Liselotte W Andersen, Joseph I Hoffman, Simon J Goodman, Filipe G Vieira, Rasmus Heller, Ida Moltke, Morten Tange Olsen
Origin and expansion of the world's most widespread pinniped: Range-wide population genomics of the harbour seal (Phoca vitulina).
Mol Ecol: 2022, 31(6);1682-1699
[PubMed:35068013] (I p)

Mette K Andersen, Line Skotte, Emil Jørsboe, Ryan Polito, Frederik F Stæger, Peter Aldiss, Kristian Hanghøj, Ryan K Waples, Cindy G Santander, Niels Grarup, Inger K Dahl-Petersen, Lars J Diaz, Maria Overvad, Ninna K Senftleber, Bolette Søborg, Christina V L Larsen, Clara Lemoine, Oluf Pedersen, Bjarke Feenstra, Peter Bjerregaard, Mads Melbye, Marit E Jørgensen, Nils J Færgeman, Anders Koch, Thomas Moritz, Matthew P Gillum, Ida Moltke, Torben Hansen, Anders Albrechtsen
Loss of Sucrase-Isomaltase Function Increases Acetate Levels and Improves Metabolic Health in Greenlandic Cohorts.
Gastroenterology: 2022, 162(4);1171-1182.e3
[PubMed:34914943] (I p)

Emil Jørsboe, Anders Albrechtsen
Efficient approaches for large-scale GWAS with genotype uncertainty.
G3 (Bethesda): 2022, 12(1);
[PubMed:34865001] (I p)

Casia Nursyifa, Anna Brüniche-Olsen, Genis Garcia-Erill, Rasmus Heller, Anders Albrechtsen
Joint identification of sex and sex-linked scaffolds in non-model organisms using low depth sequencing data.
Mol Ecol Resour: 2022, 22(2);458-467
[PubMed:34431216] (I p)


2021

Laura D Bertola, Susan M Miller, Vivienne L Williams, Vincent N Naude, Peter Coals, Simon G Dures, Philipp Henschel, Monica Chege, Etotépé A Sogbohossou, Arame Ndiaye, Martial Kiki, Angela Gaylard, Dennis K Ikanda, Matthew S Becker, Peter Lindsey

Evol Appl: 2022, 15(1);22-39
[PubMed:35126646] (P e)

Kasper Thorup, Lykke Pedersen, Rute R da Fonseca, Babak Naimi, David Nogués-Bravo, Mario Krapp, Andrea Manica, Mikkel Willemoes, Sissel Sjöberg, Shaohong Feng, Guangji Chen, Alba Rey-Iglesia, Paula F Campos, Robert Beyer, Miguel B Araújo, Anders J Hansen, Guojie Zhang, Anders P Tøttrup, Carsten Rahbek
Response of an Afro-Palearctic bird migrant to glaciation cycles.
Proc Natl Acad Sci U S A: 2021, 118(52);
[PubMed:34949638] (I p)

Mikkel-Holger S Sinding, Shyam Gopalakrishnan, Katrine Raundrup, Love Dalén, Jonathan Threlfall, Darwin Tree of Life Barcoding collective, Wellcome Sanger Institute Tree of Life programme, Wellcome Sanger Institute Scientific Operations: DNA Pipelines collective, Tree of Life Core Informatics collective, Darwin Tree of Life Consortium, Tom Gilbert

Wellcome Open Res: 2021, 6;310
[PubMed:34926833] (P e)

Mette K Andersen, Line Skotte, Emil Jørsboe, Ryan Polito, Frederik F Stæger, Peter Aldiss, Kristian Hanghøj, Ryan K Waples, Cindy G Santander, Niels Grarup, Inger K Dahl-Petersen, Lars J Diaz, Maria Overvad, Ninna K Senftleber, Bolette Søborg, Christina V L Larsen, Clara Lemoine, Oluf Pedersen, Bjarke Feenstra, Peter Bjerregaard, Mads Melbye, Marit E Jørgensen, Nils J Færgeman, Anders Koch, Thomas Moritz, Matthew P Gillum, Ida Moltke, Torben Hansen, Anders Albrechtsen
Loss of Sucrase-Isomaltase Function Increases Acetate Levels and Improves Metabolic Health in Greenlandic Cohorts.
Gastroenterology: 2022, 162(4);1171-1182.e3
[PubMed:34914943] (I p)

Alissa L Severson, Thorfinn Sand Korneliussen, Ida Moltke
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data.
Bioinformatics: 2021, 38(4);1159-61
[PubMed:34718411] (I a)

Mikkel-Holger S Sinding, Marta M Ciucani, Jazmín Ramos-Madrigal, Alberto Carmagnini, Jacob Agerbo Rasmussen, Shaohong Feng, Guangji Chen, Filipe G Vieira, Valeria Mattiangeli, Rajinder K Ganjoo, Greger Larson, Thomas Sicheritz-Pontén, Bent Petersen, Laurent Frantz, M Thomas P Gilbert, Daniel G Bradley

iScience: 2021, 24(11);103226
[PubMed:34712923] (I e)

Ida Moltke, Thorfinn Sand Korneliussen, Andaine Seguin-Orlando, J Víctor Moreno-Mayar, Ernie LaPointe, William Billeck, Eske Willerslev
Identifying a living great-grandson of the Lakota Sioux leader Tatanka Iyotake (Sitting Bull).
Sci Adv: 2021, 7(44);eabh2013
[PubMed:34705496] (I p)

Anna Brüniche-Olsen, Kenneth F Kellner, Jerrold L Belant, J Andrew DeWoody
Life-history traits and habitat availability shape genomic diversity in birds: implications for conservation.
Proc Biol Sci: 2021, 288(1961);20211441
[PubMed:34702080] (I p)

Marta Maria Ciucani, Julie Kragmose Jensen, Mikkel-Holger S Sinding, Oliver Smith, Saverio Bartolini Lucenti, Erika Rosengren, Lorenzo Rook, Caterinella Tuveri, Marisa Arca, Enrico Cappellini, Marco Galaverni, Ettore Randi, Chunxue Guo, Guojie Zhang, Thomas Sicheritz-Pontén, Love Dalén, M Thomas P Gilbert, Shyam Gopalakrishnan
Evolutionary history of the extinct Sardinian dhole.
Curr Biol: 2021, 31(24);5571-5579.e6
[PubMed:34655517] (I p)

Claudia Fontsere, Peter Frandsen, Jessica Hernandez-Rodriguez, Jonas Niemann, Camilla Hjorth Scharff-Olsen, Dominique Vallet, Pascaline Le Gouar, Nelly Ménard, Arcadi Navarro, Hans R Siegismund, Christina Hvilsom, M Thomas P Gilbert, Martin Kuhlwilm, David Hughes, Tomas Marques-Bonet
The genetic impact of an Ebola outbreak on a wild gorilla population.
BMC Genomics: 2021, 22(1);735
[PubMed:34635054] (I e)

Jonas Meisner, Anders Albrechtsen, Kristian Hanghøj
Detecting selection in low-coverage high-throughput sequencing data using principal component analysis.
BMC Bioinformatics: 2021, 22(1);470
[PubMed:34587903] (I e)

Tatiana R Feuerborn, Alberto Carmagnini, Robert J Losey, Tatiana Nomokonova, Arthur Askeyev, Igor Askeyev, Oleg Askeyev, Ekaterina E Antipina, Martin Appelt, Olga P Bachura, Fiona Beglane, Daniel G Bradley, Kevin G Daly, Shyam Gopalakrishnan, Kristian Murphy Gregersen, Chunxue Guo, Andrei V Gusev, Carleton Jones, Pavel A Kosintsev, Yaroslav V Kuzmin, Valeria Mattiangeli, Angela R Perri, Andrei V Plekhanov, Jazmín Ramos-Madrigal, Anne Lisbeth Schmidt, Dilyara Shaymuratova, Oliver Smith, Lilia V Yavorskaya, Guojie Zhang, Eske Willerslev, Morten Meldgaard, M Thomas P Gilbert, Greger Larson, Love Dalén, Anders J Hansen, Mikkel-Holger S Sinding, Laurent Frantz
Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal.
Proc Natl Acad Sci U S A: 2021, 118(39);
[PubMed:34544854] (I p)

Yuan Yuan, Yaolei Zhang, Peijun Zhang, Chang Liu, Jiahao Wang, Haiyu Gao, A Rus Hoelzel, Inge Seim, Meiqi Lv, Mingli Lin, Lijun Dong, Haoyang Gao, Zixin Yang, Francesco Caruso, Wenzhi Lin, Rute R da Fonseca, Ding Wang, Xianyan Wang, Marianne H Rasmussen, Mingming Liu, Jinsong Zheng, Liyuan Zhao, Paula F Campos, Hui Kang, Maria Iversen, Yue Song, Xinyu Guo, Jiao Guo, Yating Qin, Shanshan Pan, Qiwu Xu, Lingfeng Meng, Yunga A, Shanshan Liu, Simon Ming-Yuen Lee, Xin Liu, Xun Xu, Huanming Yang, Guangyi Fan, Kun Wang, Songhai Li
Comparative genomics provides insights into the aquatic adaptations of mammals.
Proc Natl Acad Sci U S A: 2021, 118(37);
[PubMed:34503999] (I p)

Shanlin Liu, Michael V Westbury, Nicolas Dussex, Kieren J Mitchell, Mikkel-Holger S Sinding, Peter D Heintzman, David A Duchêne, Joshua D Kapp, Johanna von Seth, Holly Heiniger, Fátima Sánchez-Barreiro, Ashot Margaryan, Remi André-Olsen, Binia De Cahsan, Guanliang Meng, Chentao Yang, Lei Chen, Tom van der Valk, Yoshan Moodley, Kees Rookmaaker, Michael W Bruford, Oliver Ryder, Cynthia Steiner, Linda G R Bruins-van Sonsbeek, Sergey Vartanyan, Chunxue Guo, Alan Cooper, Pavel Kosintsev, Irina Kirillova, Adrian M Lister, Tomas Marques-Bonet, Shyam Gopalakrishnan, Robert R Dunn, Eline D Lorenzen, Beth Shapiro, Guojie Zhang, Pierre-Olivier Antoine, Love Dalén, M Thomas P Gilbert
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family.
Cell: 2021, 184(19);4874-4885.e16
[PubMed:34433011] (I p)

Casia Nursyifa, Anna Brüniche-Olsen, Genis Garcia-Erill, Rasmus Heller, Anders Albrechtsen
Joint identification of sex and sex-linked scaffolds in non-model organisms using low depth sequencing data.
Mol Ecol Resour: 2022, 22(2);458-467
[PubMed:34431216] (I p)

Deborah M Leigh, Charles B van Rees, Katie L Millette, Martin F Breed, Chloé Schmidt, Laura D Bertola, Brian K Hand, Margaret E Hunter, Evelyn L Jensen, Francine Kershaw, Libby Liggins, Gordon Luikart, Stéphanie Manel, Joachim Mergeay, Joshua M Miller, Gernot Segelbacher, Sean Hoban, Ivan Paz-Vinas
Opportunities and challenges of macrogenetic studies.
Nat Rev Genet: 2021, 22(12);791-807
[PubMed:34408318] (I p)

Benjamin N Sacks, Kieren J Mitchell, Cate B Quinn, Lauren M Hennelly, Mikkel-Holger S Sinding, Mark J Statham, Sophie Preckler-Quisquater, Steven R Fain, Logan Kistler, Stevi L Vanderzwan, Julie A Meachen, Elaine A Ostrander, Laurent A F Frantz
Pleistocene origins, western ghost lineages, and the emerging phylogeographic history of the red wolf and coyote.
Mol Ecol: 2021, 30(17);4292-4304
[PubMed:34181791] (I p)

Andrew N Black, Janna R Willoughby, Anna Brüniche-Olsen, Brian L Pierce, J Andrew DeWoody
The endangered White Sands pupfish (Cyprinodon tularosa) genome reveals low diversity and heterogenous patterns of differentiation.
Mol Ecol Resour: 2021, 21(7);2520-2532
[PubMed:34137170] (I p)

Ashot Margaryan, Mikkel-Holger S Sinding, Christian Carøe, Vladimir Yamshchikov, Igor Burtsev, M Thomas P Gilbert
The genomic origin of Zana of Abkhazia.
Adv Genet (Hoboken): 2021, 2(2);e10051
[PubMed:36618122] (I e)

Fei Xie, Wei Jin, Huazhe Si, Yuan Yuan, Ye Tao, Junhua Liu, Xiaoxu Wang, Chengjian Yang, Qiushuang Li, Xiaoting Yan, Limei Lin, Qian Jiang, Lei Zhang, Changzheng Guo, Chris Greening, Rasmus Heller, Le Luo Guan, Phillip B Pope, Zhiliang Tan, Weiyun Zhu, Min Wang, Qiang Qiu, Zhipeng Li, Shengyong Mao
An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants.
Microbiome: 2021, 9(1);137
[PubMed:34118976] (I e)

Chang Liu, Jianbo Gao, Jinghui Huang, Wen Wang, Rasmus Heller, Qiang Qiu
Giraffa camelopardalis.
Trends Genet: 2021, 37(9);860-861
[PubMed:34112506] (I p)

Anne Krogh Nøhr, Kristian Hanghøj, Genís Garcia-Erill, Zilong Li, Ida Moltke, Anders Albrechtsen
NGSremix: a software tool for estimating pairwise relatedness between admixed individuals from next-generation sequencing data.
G3 (Bethesda): 2021, 11(8);
[PubMed:34015083] (I p)

Patrícia Pečnerová, David Díez-Del-Molino, Tom van der Valk, Marianne Dehasque, Anders Götherström, Love Dalén
Mammuthus sp. (Early and Middle Pleistocene Mammoths).
Trends Genet: 2021, 37(7);682-683
[PubMed:33985817] (I p)

Anne Krogh Nøhr, Hans Eriksson, Mary Hobart, Ida Moltke, Raimund Buller, Anders Albrechtsen, Stinus Lindgreen
Predictors and trajectories of treatment response to SSRIs in patients suffering from PTSD.
Psychiatry Res: 2021, 301;113964
[PubMed:33975171] (I p)

Lucie A Bergeron, Søren Besenbacher, Jaco Bakker, Jiao Zheng, Panyi Li, George Pacheco, Mikkel-Holger S Sinding, Maria Kamilari, M Thomas P Gilbert, Mikkel H Schierup, Guojie Zhang
The germline mutational process in rhesus macaque and its implications for phylogenetic dating.
Gigascience: 2021, 10(5);
[PubMed:33954793] (I p)

Theresia M Schnurr, Emil Jørsboe, Alexandra Chadt, Inger K Dahl-Petersen, Jonas M Kristensen, Jørgen F P Wojtaszewski, Christian Springer, Peter Bjerregaard, Søren Brage, Oluf Pedersen, Ida Moltke, Niels Grarup, Hadi Al-Hasani, Anders Albrechtsen, Marit E Jørgensen, Torben Hansen
Physical activity attenuates postprandial hyperglycaemia in homozygous TBC1D4 loss-of-function mutation carriers.
Diabetologia: 2021, 64(8);1795-1804
[PubMed:33912980] (I p)

Johanna von Seth, Nicolas Dussex, David Díez-Del-Molino, Tom van der Valk, Verena E Kutschera, Marcin Kierczak, Cynthia C Steiner, Shanlin Liu, M Thomas P Gilbert, Mikkel-Holger S Sinding, Stefan Prost, Katerina Guschanski, Senthilvel K S S Nathan, Selina Brace, Yvonne L Chan, Christopher W Wheat, Pontus Skoglund, Oliver A Ryder, Benoit Goossens, Anders Götherström, Love Dalén
Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations.
Nat Commun: 2021, 12(1);2393
[PubMed:33896938] (I e)

Johanna L A Paijmans, Axel Barlow, Matthew S Becker, James A Cahill, Joerns Fickel, Daniel W G Förster, Katrin Gries, Stefanie Hartmann, Rasmus Worsøe Havmøller, Kirstin Henneberger, Christian Kern, Andrew C Kitchener, Eline D Lorenzen, Frieder Mayer, Stephen J OBrien, Johanna von Seth, Mikkel-Holder S Sinding, Göran Spong, Olga Uphyrkina, Bettina Wachter, Michael V Westbury, Love Dalén, Jong Bhak, Andrea Manica, Michael Hofreiter
African and Asian leopards are highly differentiated at the genomic level.
Curr Biol: 2021, 31(9);1872-1882.e5
[PubMed:33848458] (I p)

Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang, Andrew Hart Reeve, Duo Xie, Guangji Chen, Chunxue Guo, Brant C Faircloth, Bent Petersen, Zongji Wang, Qi Zhou, Mark Diekhans, Wanjun Chen, Sergio Andreu-Sánchez, Ashot Margaryan, Jason Travis Howard, Carole Parent, George Pacheco, Mikkel-Holger S Sinding, Lara Puetz, Emily Cavill, Ângela M Ribeiro, Leopold Eckhart, Jon Fjeldså, Peter A Hosner, Robb T Brumfield, Les Christidis, Mads F Bertelsen, Thomas Sicheritz-Ponten, Dieter Thomas Tietze, Bruce C Robertson, Gang Song, Gerald Borgia, Santiago Claramunt, Irby J Lovette, Saul J Cowen, Peter Njoroge, John Philip Dumbacher, Oliver A Ryder, Jérôme Fuchs, Michael Bunce, David W Burt, Joel Cracraft, Guanliang Meng, Shannon J Hackett, Peter G Ryan, Knud Andreas Jønsson, Ian G Jamieson, Rute R da Fonseca, Edward L Braun, Peter Houde, Siavash Mirarab, Alexander Suh, Bengt Hansson, Suvi Ponnikas, Hanna Sigeman, Martin Stervander, Paul B Frandsen, Henriette van der Zwan, Rencia van der Sluis, Carina Visser, Christopher N Balakrishnan, Andrew G Clark, John W Fitzpatrick, Reed Bowman, Nancy Chen, Alison Cloutier, Timothy B Sackton, Scott V Edwards, Dustin J Foote, Subir B Shakya, Frederick H Sheldon, Alain Vignal, André E R Soares, Beth Shapiro, Jacob González-Solís, Joan Ferrer-Obiol, Julio Rozas, Marta Riutort, Anna Tigano, Vicki Friesen, Love Dalén, Araxi O Urrutia, Tamás Székely, Yang Liu, Michael G Campana, André Corvelo, Robert C Fleischer, Kim M Rutherford, Neil J Gemmell, Nicolas Dussex, Henrik Mouritsen, Nadine Thiele, Kira Delmore, Miriam Liedvogel, Andre Franke, Marc P Hoeppner, Oliver Krone, Adam M Fudickar, Borja Milá, Ellen D Ketterson, Andrew Eric Fidler, Guillermo Friis, Ángela M Parody-Merino, Phil F Battley, Murray P Cox, Nicholas Costa Barroso Lima, Francisco Prosdocimi, Thomas Lee Parchman, Barney A Schlinger, Bette A Loiselle, John G Blake, Haw Chuan Lim, Lainy B Day, Matthew J Fuxjager, Maude W Baldwin, Michael J Braun, Morgan Wirthlin, Rebecca B Dikow, T Brandt Ryder, Glauco Camenisch, Lukas F Keller, Jeffrey M DaCosta, Mark E Hauber, Matthew I M Louder, Christopher C Witt, Jimmy A McGuire, Joann Mudge, Libby C Megna, Matthew D Carling, Biao Wang, Scott A Taylor, Glaucia Del-Rio, Alexandre Aleixo, Ana Tereza Ribeiro Vasconcelos, Claudio V Mello, Jason T Weir, David Haussler, Qiye Li, Huanming Yang, Jian Wang, Fumin Lei, Carsten Rahbek, M Thomas P Gilbert, Gary R Graves, Erich D Jarvis, Benedict Paten, Guojie Zhang
Author Correction: Dense sampling of bird diversity increases power of comparative genomics.
Nature: 2021, 592(7856);E24
[PubMed:33833441] (I p)

Anne Krogh Nøhr, Morten Lindow, Annika Forsingdal, Samuel Demharter, Troels Nielsen, Raimund Buller, Ida Moltke, Morana Vitezic, Anders Albrechtsen
A large-scale genome-wide gene expression analysis in peripheral blood identifies very few differentially expressed genes related to antidepressant treatment and response in patients with major depressive disorder.
Neuropsychopharmacology: 2021, 46(7);1324-1332
[PubMed:33833401] (I p)

André Gomes-Dos-Santos, Manuel Lopes-Lima, André M Machado, António Marcos Ramos, Ana Usié, Ivan N Bolotov, Ilya V Vikhrev, Sophie Breton, L Filipe C Castro, Rute R da Fonseca, Juergen Geist, Martin E Österling, Vincent Prié, Amílcar Teixeira, Han Ming Gan, Oleg Simakov, Elsa Froufe
The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758).
DNA Res: 2021, 28(2);
[PubMed:33755103] (I p)

Chang Liu, Jianbo Gao, Xinxin Cui, Zhipeng Li, Lei Chen, Yuan Yuan, Yaolei Zhang, Liangwei Mei, Lan Zhao, Dan Cai, Mingliang Hu, Botong Zhou, Zihe Li, Tao Qin, Huazhe Si, Guangyu Li, Zeshan Lin, Yicheng Xu, Chenglong Zhu, Yuan Yin, Chenzhou Zhang, Wenjie Xu, Qingjie Li, Kun Wang, M Thomas P Gilbert, Rasmus Heller, Wen Wang, Jinghui Huang, Qiang Qiu
A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe.
Sci Adv: 2021, 7(12);
[PubMed:33731352] (I e)

Ryan K Waples, Aviaja L Hauptmann, Inge Seiding, Emil Jørsboe, Marit E Jørgensen, Niels Grarup, Mette K Andersen, Christina V L Larsen, Peter Bjerregaard, Garrett Hellenthal, Torben Hansen, Anders Albrechtsen, Ida Moltke
The genetic history of Greenlandic-European contact.
Curr Biol: 2021, 31(10);2214-2219.e4
[PubMed:33711251] (I p)

Ashot Margaryan, Daniel J Lawson, Martin Sikora, Fernando Racimo, Simon Rasmussen, Ida Moltke, Lara M Cassidy, Emil Jørsboe, Andrés Ingason, Mikkel W Pedersen, Thorfinn Korneliussen, Helene Wilhelmson, Magdalena M Buś, Peter de Barros Damgaard, Rui Martiniano, Gabriel Renaud, Claude Bhérer, J Víctor Moreno-Mayar, Anna K Fotakis, Marie Allen, Raili Allmäe, Martyna Molak, Enrico Cappellini, Gabriele Scorrano, Hugh McColl, Alexandra Buzhilova, Allison Fox, Anders Albrechtsen, Berit Schütz, Birgitte Skar, Caroline Arcini, Ceri Falys, Charlotte Hedenstierna Jonson, Dariusz Błaszczyk, Denis Pezhemsky, Gordon Turner-Walker, Hildur Gestsdóttir, Inge Lundstrøm, Ingrid Gustin, Ingrid Mainland, Inna Potekhina, Italo M Muntoni, Jade Cheng, Jesper Stenderup, Jilong Ma, Julie Gibson, Jüri Peets, Jörgen Gustafsson, Katrine H Iversen, Linzi Simpson, Lisa Strand, Louise Loe, Maeve Sikora, Marek Florek, Maria Vretemark, Mark Redknap, Monika Bajka, Tamara Pushkina, Morten Søvsø, Natalia Grigoreva, Tom Christensen, Ole Kastholm, Otto Uldum, Pasquale Favia, Per Holck, Sabine Sten, Símun V Arge, Sturla Ellingvåg, Vayacheslav Moiseyev, Wiesław Bogdanowicz, Yvonne Magnusson, Ludovic Orlando, Peter Pentz, Mads Dengsø Jessen, Anne Pedersen, Mark Collard, Daniel G Bradley, Marie Louise Jørkov, Jette Arneborg, Niels Lynnerup, Neil Price, M Thomas P Gilbert, Morten E Allentoft, Jan Bill, Søren M Sindbæk, Lotte Hedeager, Kristian Kristiansen, Rasmus Nielsen, Thomas Werge, Eske Willerslev
Author Correction: Population genomics of the Viking world.
Nature: 2021, 591(7851);E29
[PubMed:33707634] (I p)

Patrícia Pečnerová, Genís Garcia-Erill, Xiaodong Liu, Casia Nursyifa, Ryan K Waples, Cindy G Santander, Liam Quinn, Peter Frandsen, Jonas Meisner, Frederik Filip Stæger, Malthe Sebro Rasmussen, Anna Brüniche-Olsen, Christian Hviid Friis Jørgensen, Rute R da Fonseca, Hans R Siegismund, Anders Albrechtsen, Rasmus Heller, Ida Moltke, Kristian Hanghøj
High genetic diversity and low differentiation reflect the ecological versatility of the African leopard.
Curr Biol: 2021, 31(9);1862-1871.e5
[PubMed:33636121] (I p)


2020

Daniela Pinto, Rute R da Fonseca
Evolution of the extracytoplasmic function σ factor protein family.
NAR Genom Bioinform: 2020, 2(1);lqz026
[PubMed:33575573] (I e)

Tatiana R Feuerborn, Eleftheria Palkopoulou, Tom van der Valk, Johanna von Seth, Arielle R Munters, Patrícia Pečnerová, Marianne Dehasque, Irene Ureña, Erik Ersmark, Vendela Kempe Lagerholm, Maja Krzewińska, Ricardo Rodríguez-Varela, Anders Götherström, Love Dalén, David Díez-Del-Molino
Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets.
BMC Genomics: 2020, 21(1);844
[PubMed:33256612] (I e)

Bao Wang, Zhongkai Wang, Jiong Zhou, Wei Liu, Zeshan Lin, Chenzhou Zhang, Guichun Liu, Botong Zhou, Wenting Wan, Ruoping Zhao, Wen Wang, Rasmus Heller, Lei Chen

Front Genet: 2020, 11;582638
[PubMed:33250921] (P e)

Genís Garcia-Erill, Michael Munkholm Kjaer, Anders Albrechtsen, Hans Redlef Siegismund, Rasmus Heller
Vicariance followed by secondary gene flow in a young gazelle species complex.
Mol Ecol: 2021, 30(2);528-544
[PubMed:33226701] (I p)

Josefin Stiller, Rute R da Fonseca, Michael E Alfaro, Brant C Faircloth, Nerida G Wilson, Greg W Rouse
Using ultraconserved elements to track the influence of sea-level change on leafy seadragon populations.
Mol Ecol: 2021, 30(6);1364-1380
[PubMed:33217068] (I p)

Shaohong Feng, Josefin Stiller, Yuan Deng, Joel Armstrong, Qi Fang, Andrew Hart Reeve, Duo Xie, Guangji Chen, Chunxue Guo, Brant C Faircloth, Bent Petersen, Zongji Wang, Qi Zhou, Mark Diekhans, Wanjun Chen, Sergio Andreu-Sánchez, Ashot Margaryan, Jason Travis Howard, Carole Parent, George Pacheco, Mikkel-Holger S Sinding, Lara Puetz, Emily Cavill, Ângela M Ribeiro, Leopold Eckhart, Jon Fjeldså, Peter A Hosner, Robb T Brumfield, Les Christidis, Mads F Bertelsen, Thomas Sicheritz-Ponten, Dieter Thomas Tietze, Bruce C Robertson, Gang Song, Gerald Borgia, Santiago Claramunt, Irby J Lovette, Saul J Cowen, Peter Njoroge, John Philip Dumbacher, Oliver A Ryder, Jérôme Fuchs, Michael Bunce, David W Burt, Joel Cracraft, Guanliang Meng, Shannon J Hackett, Peter G Ryan, Knud Andreas Jønsson, Ian G Jamieson, Rute R da Fonseca, Edward L Braun, Peter Houde, Siavash Mirarab, Alexander Suh, Bengt Hansson, Suvi Ponnikas, Hanna Sigeman, Martin Stervander, Paul B Frandsen, Henriette van der Zwan, Rencia van der Sluis, Carina Visser, Christopher N Balakrishnan, Andrew G Clark, John W Fitzpatrick, Reed Bowman, Nancy Chen, Alison Cloutier, Timothy B Sackton, Scott V Edwards, Dustin J Foote, Subir B Shakya, Frederick H Sheldon, Alain Vignal, André E R Soares, Beth Shapiro, Jacob González-Solís, Joan Ferrer-Obiol, Julio Rozas, Marta Riutort, Anna Tigano, Vicki Friesen, Love Dalén, Araxi O Urrutia, Tamás Székely, Yang Liu, Michael G Campana, André Corvelo, Robert C Fleischer, Kim M Rutherford, Neil J Gemmell, Nicolas Dussex, Henrik Mouritsen, Nadine Thiele, Kira Delmore, Miriam Liedvogel, Andre Franke, Marc P Hoeppner, Oliver Krone, Adam M Fudickar, Borja Milá, Ellen D Ketterson, Andrew Eric Fidler, Guillermo Friis, Ángela M Parody-Merino, Phil F Battley, Murray P Cox, Nicholas Costa Barroso Lima, Francisco Prosdocimi, Thomas Lee Parchman, Barney A Schlinger, Bette A Loiselle, John G Blake, Haw Chuan Lim, Lainy B Day, Matthew J Fuxjager, Maude W Baldwin, Michael J Braun, Morgan Wirthlin, Rebecca B Dikow, T Brandt Ryder, Glauco Camenisch, Lukas F Keller, Jeffrey M DaCosta, Mark E Hauber, Matthew I M Louder, Christopher C Witt, Jimmy A McGuire, Joann Mudge, Libby C Megna, Matthew D Carling, Biao Wang, Scott A Taylor, Glaucia Del-Rio, Alexandre Aleixo, Ana Tereza Ribeiro Vasconcelos, Claudio V Mello, Jason T Weir, David Haussler, Qiye Li, Huanming Yang, Jian Wang, Fumin Lei, Carsten Rahbek, M Thomas P Gilbert, Gary R Graves, Erich D Jarvis, Benedict Paten, Guojie Zhang
Dense sampling of bird diversity increases power of comparative genomics.
Nature: 2020, 587(7833);252-257
[PubMed:33177665] (I p)

Brooke L Whitelaw, Ira R Cooke, Julian Finn, Rute R da Fonseca, Elena A Ritschard, M T P Gilbert, Oleg Simakov, Jan M Strugnell
Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss.
Gigascience: 2020, 9(11);
[PubMed:33175168] (I p)

Xiangyu Pan, Yudong Cai, Zongjun Li, Xianqing Chen, Rasmus Heller, Nini Wang, Yu Wang, Chen Zhao, Yong Wang, Han Xu, Songhai Li, Ming Li, Cunyuan Li, Shengwei Hu, Hui Li, Kun Wang, Lei Chen, Bin Wei, Zhuqing Zheng, Weiwei Fu, Yue Yang, Tingting Zhang, Zhuoting Hou, Yueyang Yan, Xiaoyang Lv, Wei Sun, Xinyu Li, Shisheng Huang, Lixiang Liu, Shengyong Mao, Wenqing Liu, Jinlian Hua, Zhipeng Li, Guojie Zhang, Yulin Chen, Xihong Wang, Qiang Qiu, Brian P Dalrymple, Wen Wang, Yu Jiang
Modes of genetic adaptations underlying functional innovations in the rumen.
Sci China Life Sci: 2021, 64(1);1-21
[PubMed:33165812] (I p)

Ninna K Senftleber, Anders Albrechtsen, Lotte Lauritzen, Christina Lytken Larsen, Peter Bjerregaard, Lars J Diaz, Pernille F Rønn, Marit E Jørgensen
Omega-3 fatty acids and risk of cardiovascular disease in Inuit: First prospective cohort study.
Atherosclerosis: 2020, 312;28-34
[PubMed:32949835] (I p)

Ashot Margaryan, Daniel J Lawson, Martin Sikora, Fernando Racimo, Simon Rasmussen, Ida Moltke, Lara M Cassidy, Emil Jørsboe, Andrés Ingason, Mikkel W Pedersen, Thorfinn Korneliussen, Helene Wilhelmson, Magdalena M Buś, Peter de Barros Damgaard, Rui Martiniano, Gabriel Renaud, Claude Bhérer, J Víctor Moreno-Mayar, Anna K Fotakis, Marie Allen, Raili Allmäe, Martyna Molak, Enrico Cappellini, Gabriele Scorrano, Hugh McColl, Alexandra Buzhilova, Allison Fox, Anders Albrechtsen, Berit Schütz, Birgitte Skar, Caroline Arcini, Ceri Falys, Charlotte Hedenstierna Jonson, Dariusz Błaszczyk, Denis Pezhemsky, Gordon Turner-Walker, Hildur Gestsdóttir, Inge Lundstrøm, Ingrid Gustin, Ingrid Mainland, Inna Potekhina, Italo M Muntoni, Jade Cheng, Jesper Stenderup, Jilong Ma, Julie Gibson, Jüri Peets, Jörgen Gustafsson, Katrine H Iversen, Linzi Simpson, Lisa Strand, Louise Loe, Maeve Sikora, Marek Florek, Maria Vretemark, Mark Redknap, Monika Bajka, Tamara Pushkina, Morten Søvsø, Natalia Grigoreva, Tom Christensen, Ole Kastholm, Otto Uldum, Pasquale Favia, Per Holck, Sabine Sten, Símun V Arge, Sturla Ellingvåg, Vayacheslav Moiseyev, Wiesław Bogdanowicz, Yvonne Magnusson, Ludovic Orlando, Peter Pentz, Mads Dengsø Jessen, Anne Pedersen, Mark Collard, Daniel G Bradley, Marie Louise Jørkov, Jette Arneborg, Niels Lynnerup, Neil Price, M Thomas P Gilbert, Morten E Allentoft, Jan Bill, Søren M Sindbæk, Lotte Hedeager, Kristian Kristiansen, Rasmus Nielsen, Thomas Werge, Eske Willerslev
Population genomics of the Viking world.
Nature: 2020, 585(7825);390-396
[PubMed:32939067] (I p)

Zhuqing Zheng, Xihong Wang, Ming Li, Yunjia Li, Zhirui Yang, Xiaolong Wang, Xiangyu Pan, Mian Gong, Yu Zhang, Yingwei Guo, Yu Wang, Jing Liu, Yudong Cai, Qiuming Chen, Moses Okpeku, Licia Colli, Dawei Cai, Kun Wang, Shisheng Huang, Tad S Sonstegard, Ali Esmailizadeh, Wenguang Zhang, Tingting Zhang, Yangbin Xu, Naiyi Xu, Yi Yang, Jianlin Han, Lei Chen, Joséphine Lesur, Kevin G Daly, Daniel G Bradley, Rasmus Heller, Guojie Zhang, Wen Wang, Yulin Chen, Yu Jiang
The origin of domestication genes in goats.
Sci Adv: 2020, 6(21);eaaz5216
[PubMed:32671210] (I e)

André M Machado, Antonio Muñoz-Merida, Elza Fonseca, Ana Veríssimo, Rui Pinto, Mónica Felício, Rute R da Fonseca, Elsa Froufe, L Filipe C Castro
Liver transcriptome resources of four commercially exploited teleost species.
Sci Data: 2020, 7(1);214
[PubMed:32636445] (I e)

Gonçalo Espregueira Themudo, Alba Rey-Iglesia, Lucía Robles Tascón, Annette Bruun Jensen, Rute R da Fonseca, Paula F Campos
Declining genetic diversity of European honeybees along the twentieth century.
Sci Rep: 2020, 10(1);10520
[PubMed:32601293] (I e)

Ninna Senftleber, Marit Eika Jørgensen, Emil Jørsboe, Fumiaki Imamura, Nita Gandhi Forouhi, Christina Lytken Larsen, Peter Bjerregaard, Torben Hansen, Anders Albrechtsen
Genetic study of the Arctic CPT1A variant suggests that its effect on fatty acid levels is modulated by traditional Inuit diet.
Eur J Hum Genet: 2020, 28(11);1592-1601
[PubMed:32561900] (I p)

Peter Frandsen, Claudia Fontsere, Svend Vendelbo Nielsen, Kristian Hanghøj, Natalia Castejon-Fernandez, Esther Lizano, David Hughes, Jessica Hernandez-Rodriguez, Thorfinn Sand Korneliussen, Frands Carlsen, Hans Redlef Siegismund, Thomas Mailund, Tomas Marques-Bonet, Christina Hvilsom
Targeted conservation genetics of the endangered chimpanzee.
Heredity (Edinb): 2020, 125(1-2);15-27
[PubMed:32346130] (I p)

Yudong Cai, Weiwei Fu, Dawei Cai, Rasmus Heller, Zhuqing Zheng, Jia Wen, Hui Li, Xiaolong Wang, Akil Alshawi, Zhouyong Sun, Siqi Zhu, Juan Wang, Miaomiao Yang, Songmei Hu, Yan Li, Zhirui Yang, Mian Gong, Yunan Hou, Tianming Lan, Kui Wu, Yulin Chen, Yu Jiang, Xihong Wang
Ancient Genomes Reveal the Evolutionary History and Origin of Cashmere-Producing Goats in China.
Mol Biol Evol: 2020, 37(7);2099-2109
[PubMed:32324877] (I p)

Genís Garcia-Erill, Anders Albrechtsen
Evaluation of model fit of inferred admixture proportions.
Mol Ecol Resour: 2020, 20(4);936-949
[PubMed:32323416] (I p)

Georgios Athanasiadis, Doug Speed, Mette K Andersen, Emil V R Appel, Niels Grarup, Ivan Brandslund, Marit Eika Jørgensen, Christina Viskum Lytken Larsen, Peter Bjerregaard, Torben Hansen, Anders Albrechtsen
Estimating narrow-sense heritability using family data from admixed populations.
Heredity (Edinb): 2020, 124(6);751-762
[PubMed:32273574] (I p)

Michael V Westbury, Stefanie Hartmann, Axel Barlow, Michaela Preick, Bogdan Ridush, Doris Nagel, Thomas Rathgeber, Reinhard Ziegler, Gennady Baryshnikov, Guilian Sheng, Arne Ludwig, Ingrid Wiesel, Love Dalen, Faysal Bibi, Lars Werdelin, Rasmus Heller, Michael Hofreiter
Hyena paleogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena.
Sci Adv: 2020, 6(11);eaay0456
[PubMed:32201717] (I e)

Mette K Andersen, Emil Jørsboe, Line Skotte, Kristian Hanghøj, Camilla H Sandholt, Ida Moltke, Niels Grarup, Timo Kern, Yuvaraj Mahendran, Bolette Søborg, Peter Bjerregaard, Christina V L Larsen, Inger K Dahl-Petersen, Hemant K Tiwari, Bjarke Feenstra, Anders Koch, Howard W Wiener, Scarlett E Hopkins, Oluf Pedersen, Mads Melbye, Bert B Boyer, Marit E Jørgensen, Anders Albrechtsen, Torben Hansen
The derived allele of a novel intergenic variant at chromosome 11 associates with lower body mass index and a favorable metabolic phenotype in Greenlanders.
PLoS Genet: 2020, 16(1);e1008544
[PubMed:31978080] (I e)

Rute R da Fonseca, Alvarina Couto, Andre M Machado, Brona Brejova, Carolin B Albertin, Filipe Silva, Paul Gardner, Tobias Baril, Alex Hayward, Alexandre Campos, Ângela M Ribeiro, Inigo Barrio-Hernandez, Henk-Jan Hoving, Ricardo Tafur-Jimenez, Chong Chu, Barbara Frazão, Bent Petersen, Fernando Peñaloza, Francesco Musacchia, Graham C Alexander, Hugo Osório, Inger Winkelmann, Oleg Simakov, Simon Rasmussen, M Ziaur Rahman, Davide Pisani, Jakob Vinther, Erich Jarvis, Guojie Zhang, Jan M Strugnell, L Filipe C Castro, Olivier Fedrigo, Mateus Patricio, Qiye Li, Sara Rocha, Agostinho Antunes, Yufeng Wu, Bin Ma, Remo Sanges, Tomas Vinar, Blagoy Blagoev, Thomas Sicheritz-Ponten, Rasmus Nielsen, M Thomas P Gilbert
A draft genome sequence of the elusive giant squid, Architeuthis dux.
Gigascience: 2020, 9(1);
[PubMed:31942620] (I p)

J Víctor Moreno-Mayar, Thorfinn Sand Korneliussen, Jyoti Dalal, Gabriel Renaud, Anders Albrechtsen, Rasmus Nielsen, Anna-Sapfo Malaspinas
A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data.
Bioinformatics: 2020, 36(3);828-841
[PubMed:31504166] (I p)


2019

Christel Enroth, Line Dahl Poulsen, Søren Iversen, Finn Kirpekar, Anders Albrechtsen, Jeppe Vinther
Detection of internal N7-methylguanosine (m7G) RNA modifications by mutational profiling sequencing.
Nucleic Acids Res: 2019, 47(20);e126
[PubMed:31504776] (I p)

Alba Refoyo-Martínez, Rute R da Fonseca, Katrín Halldórsdóttir, Einar Árnason, Thomas Mailund, Fernando Racimo
Identifying loci under positive selection in complex population histories.
Genome Res: 2019, 29(9);1506-1520
[PubMed:31362936] (I p)

Vincenza Colonna, Nunzio D'Agostino, Erik Garrison, Anders Albrechtsen, Jonas Meisner, Angelo Facchiano, Teodoro Cardi, Pasquale Tripodi
Genomic diversity and novel genome-wide association with fruit morphology in Capsicum, from 746k polymorphic sites.
Sci Rep: 2019, 9(1);10067
[PubMed:31296904] (I e)

Ângela M Ribeiro, Lara Puetz, Nicholas B Pattinson, Love Dalén, Yuan Deng, Guojie Zhang, Rute R da Fonseca, Ben Smit, M Thomas P Gilbert
31° South: The physiology of adaptation to arid conditions in a passerine bird.
Mol Ecol: 2019, 28(16);3709-3721
[PubMed:31291502] (I p)

Yu Wang, Chenzhou Zhang, Nini Wang, Zhipeng Li, Rasmus Heller, Rong Liu, Yue Zhao, Jiangang Han, Xiangyu Pan, Zhuqing Zheng, Xueqin Dai, Ceshi Chen, Mingle Dou, Shujun Peng, Xianqing Chen, Jing Liu, Ming Li, Kun Wang, Chang Liu, Zeshan Lin, Lei Chen, Fei Hao, Wenbo Zhu, Chengchuang Song, Chen Zhao, Chengli Zheng, Jianming Wang, Shengwei Hu, Cunyuan Li, Hui Yang, Lin Jiang, Guangyu Li, Mingjun Liu, Tad S Sonstegard, Guojie Zhang, Yu Jiang, Wen Wang, Qiang Qiu
Genetic basis of ruminant headgear and rapid antler regeneration.
Science: 2019, 364(6446);
[PubMed:31221830] (I p)

Zeshan Lin, Lei Chen, Xianqing Chen, Yingbin Zhong, Yue Yang, Wenhao Xia, Chang Liu, Wenbo Zhu, Han Wang, Biyao Yan, Yifeng Yang, Xing Liu, Kjersti Sternang Kvie, Knut Håkon Røed, Kun Wang, Wuhan Xiao, Haijun Wei, Guangyu Li, Rasmus Heller, M Thomas P Gilbert, Qiang Qiu, Wen Wang, Zhipeng Li

Science: 2019, 364(6446);
[PubMed:31221829] (I p)

Lei Chen, Qiang Qiu, Yu Jiang, Kun Wang, Zeshan Lin, Zhipeng Li, Faysal Bibi, Yongzhi Yang, Jinhuan Wang, Wenhui Nie, Weiting Su, Guichun Liu, Qiye Li, Weiwei Fu, Xiangyu Pan, Chang Liu, Jie Yang, Chenzhou Zhang, Yuan Yin, Yu Wang, Yue Zhao, Chen Zhang, Zhongkai Wang, Yanli Qin, Wei Liu, Bao Wang, Yandong Ren, Ru Zhang, Yan Zeng, Rute R da Fonseca, Bin Wei, Ran Li, Wenting Wan, Ruoping Zhao, Wenbo Zhu, Yutao Wang, Shengchang Duan, Yun Gao, Yong E Zhang, Chunyan Chen, Christina Hvilsom, Clinton W Epps, Leona G Chemnick, Yang Dong, Siavash Mirarab, Hans Redlef Siegismund, Oliver A Ryder, M Thomas P Gilbert, Harris A Lewin, Guojie Zhang, Rasmus Heller, Wen Wang
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits.
Science: 2019, 364(6446);
[PubMed:31221828] (I p)

Gabriel Renaud, Kristian Hanghøj, Thorfinn Sand Korneliussen, Eske Willerslev, Ludovic Orlando
Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples.
Genetics: 2019, 212(3);587-614
[PubMed:31088861] (I p)

Antoine Fages, Kristian Hanghøj, Naveed Khan, Charleen Gaunitz, Andaine Seguin-Orlando, Michela Leonardi, Christian McCrory Constantz, Cristina Gamba, Khaled A S Al-Rasheid, Silvia Albizuri, Ahmed H Alfarhan, Morten Allentoft, Saleh Alquraishi, David Anthony, Nurbol Baimukhanov, James H Barrett, Jamsranjav Bayarsaikhan, Norbert Benecke, Eloísa Bernáldez-Sánchez, Luis Berrocal-Rangel, Fereidoun Biglari, Sanne Boessenkool, Bazartseren Boldgiv, Gottfried Brem, Dorcas Brown, Joachim Burger, Eric Crubézy, Linas Daugnora, Hossein Davoudi, Peter de Barros Damgaard, María de Los Ángeles de Chorro Y de Villa-Ceballos, Sabine Deschler-Erb, Cleia Detry, Nadine Dill, Maria do Mar Oom, Anna Dohr, Sturla Ellingvåg, Diimaajav Erdenebaatar, Homa Fathi, Sabine Felkel, Carlos Fernández-Rodríguez, Esteban García-Viñas, Mietje Germonpré, José D Granado, Jón H Hallsson, Helmut Hemmer, Michael Hofreiter, Aleksei Kasparov, Mutalib Khasanov, Roya Khazaeli, Pavel Kosintsev, Kristian Kristiansen, Tabaldiev Kubatbek, Lukas Kuderna, Pavel Kuznetsov, Haeedeh Laleh, Jennifer A Leonard, Johanna Lhuillier, Corina Liesau von Lettow-Vorbeck, Andrey Logvin, Lembi Lõugas, Arne Ludwig, Cristina Luis, Ana Margarida Arruda, Tomas Marques-Bonet, Raquel Matoso Silva, Victor Merz, Enkhbayar Mijiddorj, Bryan K Miller, Oleg Monchalov, Fatemeh A Mohaseb, Arturo Morales, Ariadna Nieto-Espinet, Heidi Nistelberger, Vedat Onar, Albína H Pálsdóttir, Vladimir Pitulko, Konstantin Pitskhelauri, Mélanie Pruvost, Petra Rajic Sikanjic, Anita Rapan Papeša, Natalia Roslyakova, Alireza Sardari, Eberhard Sauer, Renate Schafberg, Amelie Scheu, Jörg Schibler, Angela Schlumbaum, Nathalie Serrand, Aitor Serres-Armero, Beth Shapiro, Shiva Sheikhi Seno, Irina Shevnina, Sonia Shidrang, John Southon, Bastiaan Star, Naomi Sykes, Kamal Taheri, William Taylor, Wolf-Rüdiger Teegen, Tajana Trbojević Vukičević, Simon Trixl, Dashzeveg Tumen, Sainbileg Undrakhbold, Emma Usmanova, Ali Vahdati, Silvia Valenzuela-Lamas, Catarina Viegas, Barbara Wallner, Jaco Weinstock, Victor Zaibert, Benoit Clavel, Sébastien Lepetz, Marjan Mashkour, Agnar Helgason, Kári Stefánsson, Eric Barrey, Eske Willerslev, Alan K Outram, Pablo Librado, Ludovic Orlando
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.
Cell: 2019, 177(6);1419-1435.e31
[PubMed:31056281] (I p)

Rute R da Fonseca, Irene Ureña, Sandra Afonso, Ana Elisabete Pires, Emil Jørsboe, Lounès Chikhi, Catarina Ginja
Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle.
BMC Genomics: 2019, 20(1);334
[PubMed:31053061] (I e)

Kristian Hanghøj, Ida Moltke, Philip Alstrup Andersen, Andrea Manica, Thorfinn Sand Korneliussen
Fast and accurate relatedness estimation from high-throughput sequencing data in the presence of inbreeding.
Gigascience: 2019, 8(5);
[PubMed:31042285] (I p)

Kristian Hanghøj, Gabriel Renaud, Anders Albrechtsen, Ludovic Orlando
DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage.
Gigascience: 2019, 8(4);
[PubMed:31004132] (I p)

Jonas Meisner, Anders Albrechtsen
Testing for Hardy-Weinberg equilibrium in structured populations using genotype or low-depth next generation sequencing data.
Mol Ecol Resour: 2019, 19(5);1144-1152
[PubMed:30977299] (I p)

Line Skotte, Emil Jørsboe, Thorfinn S Korneliussen, Ida Moltke, Anders Albrechtsen
Ancestry-specific association mapping in admixed populations.
Genet Epidemiol: 2019, 43(5);506-521
[PubMed:30883944] (I p)

Samuele Soraggi, Carsten Wiuf
General theory for stochastic admixture graphs and F-statistics.
Theor Popul Biol: 2019, 125;56-66
[PubMed:30562538] (I p)

Ryan K Waples, Anders Albrechtsen, Ida Moltke
Allele frequency-free inference of close familial relationships from genotypes or low-depth sequencing data.
Mol Ecol: 2019, 28(1);35-48
[PubMed:30462358] (I p)

Ângela M Ribeiro, Carlos A Canchaya, Fernando Penaloza, Juan Galindo, Rute R da Fonseca
Population genomic footprints of environmental pollution pressure in natural populations of the Mediterranean mussel.
Mar Genomics: 2019, 45;11-15
[PubMed:30447893] (I p)


2018

Arthur Gilly, Daniel Suveges, Karoline Kuchenbaecker, Martin Pollard, Lorraine Southam, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Thea Bjornland, Ryan Waples, Emil V R Appel, Elisabetta Casalone, Giorgio Melloni, Britt Kilian, Nigel W Rayner, Ioanna Ntalla, Kousik Kundu, Klaudia Walter, John Danesh, Adam Butterworth, Inês Barroso, Emmanouil Tsafantakis, George Dedoussis, Ida Moltke, Eleftheria Zeggini
Author Correction: Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.
Nat Commun: 2018, 9(1);5460
[PubMed:30568165] (I e)

Samuele Soraggi, Carsten Wiuf
General theory for stochastic admixture graphs and F-statistics.
Theor Popul Biol: 2019, 125;56-66
[PubMed:30562538] (I p)

Charles Christian Riis Hansen, Christina Hvilsom, Niels Martin Schmidt, Peter Aastrup, Peter J Van Coeverden de Groot, Hans Redlef Siegismund, Rasmus Heller
The Muskox Lost a Substantial Part of Its Genetic Diversity on Its Long Road to Greenland.
Curr Biol: 2018, 28(24);4022-4028.e5
[PubMed:30528581] (I p)

Ângela M Ribeiro, Carlos A Canchaya, Fernando Penaloza, Juan Galindo, Rute R da Fonseca
Population genomic footprints of environmental pollution pressure in natural populations of the Mediterranean mussel.
Mar Genomics: 2019, 45;11-15
[PubMed:30447893] (I p)

Arthur Gilly, Daniel Suveges, Karoline Kuchenbaecker, Martin Pollard, Lorraine Southam, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Thea Bjornland, Ryan Waples, Emil V R Appel, Elisabetta Casalone, Giorgio Melloni, Britt Kilian, Nigel W Rayner, Ioanna Ntalla, Kousik Kundu, Klaudia Walter, John Danesh, Adam Butterworth, Inês Barroso, Emmanouil Tsafantakis, George Dedoussis, Ida Moltke, Eleftheria Zeggini
Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.
Nat Commun: 2018, 9(1);4674
[PubMed:30405126] (I e)

André M Machado, Ole K Tørresen, Naoki Kabeya, Alvarina Couto, Bent Petersen, Mónica Felício, Paula F Campos, Elza Fonseca, Narcisa Bandarra, Mónica Lopes-Marques, Renato Ferraz, Raquel Ruivo, Miguel M Fonseca, Sissel Jentoft, Óscar Monroig, Rute R da Fonseca, L Filipe C Castro

Genes (Basel): 2018, 9(10);
[PubMed:30304855] (P e)

Siyang Liu, Shujia Huang, Fang Chen, Lijian Zhao, Yuying Yuan, Stephen Starko Francis, Lin Fang, Zilong Li, Long Lin, Rong Liu, Yong Zhang, Huixin Xu, Shengkang Li, Yuwen Zhou, Robert W Davies, Qiang Liu, Robin G Walters, Kuang Lin, Jia Ju, Thorfinn Korneliussen, Melinda A Yang, Qiaomei Fu, Jun Wang, Lijun Zhou, Anders Krogh, Hongyun Zhang, Wei Wang, Zhengming Chen, Zhiming Cai, Ye Yin, Huanming Yang, Mao Mao, Jay Shendure, Jian Wang, Anders Albrechtsen, Xin Jin, Rasmus Nielsen, Xun Xu
Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History.
Cell: 2018, 175(2);347-359.e14
[PubMed:30290141] (I p)

Jonas Meisner, Anders Albrechtsen
Inferring Population Structure and Admixture Proportions in Low-Depth NGS Data.
Genetics: 2018, 210(2);719-731
[PubMed:30131346] (I p)

Niels Grarup, Ida Moltke, Mette K Andersen, Peter Bjerregaard, Christina V L Larsen, Inger K Dahl-Petersen, Emil Jørsboe, Hemant K Tiwari, Scarlett E Hopkins, Howard W Wiener, Bert B Boyer, Allan Linneberg, Oluf Pedersen, Marit E Jørgensen, Anders Albrechtsen, Torben Hansen
Identification of novel high-impact recessively inherited type 2 diabetes risk variants in the Greenlandic population.
Diabetologia: 2018, 61(9);2005-2015
[PubMed:29926116] (I p)

André M Machado, Mónica Felício, Elza Fonseca, Rute R da Fonseca, L Filipe C Castro

Data Brief: 2018, 18;276-284
[PubMed:29896516] (P e)

Melissa A Ilardo, Ida Moltke, Thorfinn S Korneliussen, Jade Cheng, Aaron J Stern, Fernando Racimo, Peter de Barros Damgaard, Martin Sikora, Andaine Seguin-Orlando, Simon Rasmussen, Inge C L van den Munckhof, Rob Ter Horst, Leo A B Joosten, Mihai G Netea, Suhartini Salingkat, Rasmus Nielsen, Eske Willerslev
Physiological and Genetic Adaptations to Diving in Sea Nomads.
Cell: 2018, 173(3);569-580.e15
[PubMed:29677510] (I p)

Mette Korre Andersen, Niels Grarup, Ida Moltke, Anders Albrechtsen, Torben Hansen
Genetic architecture of obesity and related metabolic traits-recent insights from isolated populations.
Curr Opin Genet Dev: 2018, 50;74-78
[PubMed:29510341] (I p)

Emil V R Appel, Ida Moltke, Marit E Jørgensen, Peter Bjerregaard, Allan Linneberg, Oluf Pedersen, Anders Albrechtsen, Torben Hansen, Niels Grarup
Genetic determinants of glycated hemoglobin levels in the Greenlandic Inuit population.
Eur J Hum Genet: 2018, 26(6);868-875
[PubMed:29483669] (I p)

Charleen Gaunitz, Antoine Fages, Kristian Hanghøj, Anders Albrechtsen, Naveed Khan, Mikkel Schubert, Andaine Seguin-Orlando, Ivy J Owens, Sabine Felkel, Olivier Bignon-Lau, Peter de Barros Damgaard, Alissa Mittnik, Azadeh F Mohaseb, Hossein Davoudi, Saleh Alquraishi, Ahmed H Alfarhan, Khaled A S Al-Rasheid, Eric Crubézy, Norbert Benecke, Sandra Olsen, Dorcas Brown, David Anthony, Ken Massy, Vladimir Pitulko, Aleksei Kasparov, Gottfried Brem, Michael Hofreiter, Gulmira Mukhtarova, Nurbol Baimukhanov, Lembi Lõugas, Vedat Onar, Philipp W Stockhammer, Johannes Krause, Bazartseren Boldgiv, Sainbileg Undrakhbold, Diimaajav Erdenebaatar, Sébastien Lepetz, Marjan Mashkour, Arne Ludwig, Barbara Wallner, Victor Merz, Ilja Merz, Viktor Zaibert, Eske Willerslev, Pablo Librado, Alan K Outram, Ludovic Orlando
Ancient genomes revisit the ancestry of domestic and Przewalski's horses.
Science: 2018, 360(6384);111-114
[PubMed:29472442] (I p)

Casper-Emil T Pedersen, Anders Albrechtsen, Paul D Etter, Eric A Johnson, Ludovic Orlando, Lounes Chikhi, Hans R Siegismund, Rasmus Heller
A southern African origin and cryptic structure in the highly mobile plains zebra.
Nat Ecol Evol: 2018, 2(3);491-498
[PubMed:29358610] (I p)

Reeta Sharma, Benoit Goossens, Rasmus Heller, Rita Rasteiro, Nurzhafarina Othman, Michael W Bruford, Lounès Chikhi
Genetic analyses favour an ancient and natural origin of elephants on Borneo.
Sci Rep: 2018, 8(1);880
[PubMed:29343863] (I e)

J Víctor Moreno-Mayar, Ben A Potter, Lasse Vinner, Matthias Steinrücken, Simon Rasmussen, Jonathan Terhorst, John A Kamm, Anders Albrechtsen, Anna-Sapfo Malaspinas, Martin Sikora, Joshua D Reuther, Joel D Irish, Ripan S Malhi, Ludovic Orlando, Yun S Song, Rasmus Nielsen, David J Meltzer, Eske Willerslev
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans.
Nature: 2018, 553(7687);203-207
[PubMed:29323294] (I p)

Niels Grarup, Ida Moltke, Mette K Andersen, Maria Dalby, Kristoffer Vitting-Seerup, Timo Kern, Yuvaraj Mahendran, Emil Jørsboe, Christina V L Larsen, Inger K Dahl-Petersen, Arthur Gilly, Daniel Suveges, George Dedoussis, Eleftheria Zeggini, Oluf Pedersen, Robin Andersson, Peter Bjerregaard, Marit E Jørgensen, Anders Albrechtsen, Torben Hansen
Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes.
Nat Genet: 2018, 50(2);172-174
[PubMed:29311636] (I p)

Samuele Soraggi, Carsten Wiuf, Anders Albrechtsen
Powerful Inference with the D-Statistic on Low-Coverage Whole-Genome Data.
G3 (Bethesda): 2018, 8(2);551-566
[PubMed:29196497] (I e)


<2018

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