Grepper - Revision history

Thorfinn: /* Installation */

2014-03-19T14:49:10Z

Installation

← Older revision		Revision as of 16:49, 19 March 2014
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	<pre>		<pre>
	wget http://popgen.dk/software/download/grepper.cpp		wget http://popgen.dk/software/download/grepper.cpp
	g++ grepper -O3 -o grepper -lz		g++ grepper.cpp -O3 -o grepper -lz
	</pre>		</pre>

	=Examples=		=Examples=
	Assuming the ''keys'' file:		Assuming the ''keys'' file:

2014-03-15T18:07:33Z

@@ Line 78: / Line 78: @@
 "109" 6.7 2.5 5.8 1.8 "Virginica"
 </pre>
 If we don't care about the cases add '''-i'''
@@ Line 101: / Line 102: @@
 "109" 6.7 2.5 5.8 1.8 "Virginica"
 "110" 7.2 3.6 6.1 2.5 "virginica"
 </pre>

2014-03-15T18:06:31Z

Examples

@@ Line 69: / Line 69: @@
 "59" 6.6 2.9 4.6 1.3 "versicolor"
 "60" 5.2 2.7 3.9 1.4 "versicolor"
 </pre>

2014-03-15T18:02:22Z

Installation

@@ Line 29: / Line 29: @@
 wget http://popgen.dk/software/download/grepper.cpp
 g++ grepper -O3 -o grepper -lz
 </pre>

2014-03-15T17:59:21Z

Installation

← Older revision		Revision as of 19:59, 15 March 2014
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	=Installation=		=Installation=
	Program is a single c++ file that can be downloaded [http://popgen.dk/software/download/grepper.cpp]		Program is a single c++ file that can be downloaded [http://popgen.dk/software/download/grepper.cpp]
			<pre>
			wget http://popgen.dk/software/download/grepper.cpp
			g++ grepper -O3 -o grepper -lz
			</pre>

2014-03-15T17:58:50Z

Installation

← Older revision		Revision as of 19:58, 15 March 2014
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	=Installation=		=Installation=
	Program is a single c++ file that can be downloaded [[http://popgen.dk/software/download/grepper.cpp~~\|here:]~~]		Program is a single c++ file that can be downloaded [http://popgen.dk/software/download/grepper.cpp]

2014-03-15T17:58:34Z

Brief overview

← Older revision		Revision as of 19:58, 15 March 2014
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	-i ignore case (similar to grep -i option)		-i ignore case (similar to grep -i option)
	</pre>		</pre>

			=Installation=
			Program is a single c++ file that can be downloaded [[http://popgen.dk/software/download/grepper.cpp\|here:]]

2014-03-15T17:55:19Z

Brief overview

← Older revision		Revision as of 19:55, 15 March 2014
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	-v complement grep (similar to grep -v option)		-v complement grep (similar to grep -v option)
	-i ignore case (similar to grep -i option)		-i ignore case (similar to grep -i option)

	</pre>		</pre>

2014-03-15T17:55:09Z

Brief overview

← Older revision		Revision as of 19:55, 15 March 2014
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	-c [int]: which column to use for grepping (1 indexed)		-c [int]: which column to use for grepping (1 indexed)
	-d [char] delimitor for the datafile		-d [char] delimitor for the datafile
	-w ~~[char]~~ search for whole words (similar to grep -w option)		-w search for whole words (similar to grep -w option)
	-v ~~[char]~~ complement grep (similar to grep -v option)		-v complement grep (similar to grep -v option)
	-i ~~[char]~~ ignore case (similar to grep -i option)		-i ignore case (similar to grep -i option)

	</pre>		</pre>

2014-03-15T17:54:31Z

Brief overview

← Older revision		Revision as of 19:54, 15 March 2014
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	=Brief overview=		=Brief overview=
	<pre>		<pre>
	~~sage~~: grepper [OPTION] -k keyfile datafile.gz		usage: grepper [OPTION] -k keyfile datafile.gz
	usage: gunzip -c datafile.gz \| grepper [OPTION] -k keyfile		usage: gunzip -c datafile.gz \| grepper [OPTION] -k keyfile
	options:		options: