MediaWiki:Sidebar: Difference between revisions

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* Main
* Main
* ANGSD
* ANGSD
** ANGSD|website
** http://popgen.dk/angsd |Website
* NgsRelate
**http://www.popgen.dk/software/index.php/NgsRelate | Website
* PCAngsd
** PCAngsd|PCA, selection and inbreeding for NGS data
* evalAdmix
** evalAdmix| evaluate admixture fit
** evalAdmix#Download_and_Installation|Download
** evalAdmix#Run_command_example | Example
** evalAdmix#Input_File| Input files
* NGSadmix
**ngsAdmix|Population Structure for NGS data
** NgsAdmix#Download_and_Installation|Download
** NgsAdmix#Run_command_example | Example
** NgsAdmix#Input_File| Input files
** NgsAdmixTutorial|Tutorial
* asaMap
** asaMap| Ancestry-specific association mapping in admixed populations
** asaMap#Download| Download
** asaMap#Example| Example
** asaMap#Input_Files| Input files
** asaMap#Citation| Citation
* fastNGSadmix
** fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
** FastNGSadmix#Download| Download
** FastNGSadmix#Input_Files| Input files
** FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
** FastNGSadmix#PCA| PCA
** FastNGSadmix#Making_a_reference_panel| Making a reference panel
** FastNGSadmix#Human_reference_panels| Human reference panels
** FastNGSadmix#Citation| Citation
* relateAdmix
** relateAdmix|Relatedness estimation for admixed individuals
** relateAdmix#Installation|Download
** relateAdmix#Run_example | Example
* LDadmix
* Relate
* Relate
** Relate|Local IBD relatedness
** Relate|Local IBD relatedness
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** Relate#Change_log|Log
** Relate#Change_log|Log
* BAMSE
* BAMSE
** BAMSE| Bayesian Association of multiple SNPs
* CATS
* CATS
* ngsAdmix
** CATS|power for two stage GWAS
**NGSAdmix|NGSadmix
* R scripts
* admixRelate
** Rscripts| various R scripts
* LDadmix
 
* navigation
* navigation
** mainpage|mainpage-description
** mainpage|Software
** portal-url|portal
** http://popgen.dk|Popgen.dk
** currentevents-url|currentevents
** http://popgen.dk/wiki|ANGSD
** recentchanges-url|recentchanges
** randompage-url|randompage
** helppage|help
* SEARCH
* SEARCH
* TOOLBOX
* TOOLBOX
* LANGUAGES
* LANGUAGES

Latest revision as of 14:19, 18 July 2019

  • Main
  • ANGSD
  • NgsRelate
  • PCAngsd
    • PCAngsd|PCA, selection and inbreeding for NGS data
  • evalAdmix
    • evalAdmix| evaluate admixture fit
    • evalAdmix#Download_and_Installation|Download
    • evalAdmix#Run_command_example | Example
    • evalAdmix#Input_File| Input files
  • NGSadmix
    • ngsAdmix|Population Structure for NGS data
    • NgsAdmix#Download_and_Installation|Download
    • NgsAdmix#Run_command_example | Example
    • NgsAdmix#Input_File| Input files
    • NgsAdmixTutorial|Tutorial
  • asaMap
    • asaMap| Ancestry-specific association mapping in admixed populations
    • asaMap#Download| Download
    • asaMap#Example| Example
    • asaMap#Input_Files| Input files
    • asaMap#Citation| Citation
  • fastNGSadmix
    • fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
    • FastNGSadmix#Download| Download
    • FastNGSadmix#Input_Files| Input files
    • FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
    • FastNGSadmix#PCA| PCA
    • FastNGSadmix#Making_a_reference_panel| Making a reference panel
    • FastNGSadmix#Human_reference_panels| Human reference panels
    • FastNGSadmix#Citation| Citation
  • relateAdmix
    • relateAdmix|Relatedness estimation for admixed individuals
    • relateAdmix#Installation|Download
    • relateAdmix#Run_example | Example
  • LDadmix
  • Relate
    • Relate|Local IBD relatedness
    • Relate#Download_and_Installation|Download
    • Relate#Manual|Manual
    • Relate#Citation|citation
    • Relate#Change_log|Log
  • BAMSE
    • BAMSE| Bayesian Association of multiple SNPs
  • CATS
    • CATS|power for two stage GWAS
  • R scripts
    • Rscripts| various R scripts
  • navigation
  • SEARCH
  • TOOLBOX
  • LANGUAGES
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