MediaWiki:Sidebar: Difference between revisions

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* Main
* Main
* ANGSD
* ANGSD
** http://popgen.dk/wiki|Website
** http://popgen.dk/angsd |Website
* NgsRelate
* NgsRelate
**http://www.popgen.dk/software/index.php/NgsRelate | Website
**http://www.popgen.dk/software/index.php/NgsRelate | Website
* PCAngsd  
* PCAngsd  
** PCAngsd|PCA, selection and inbreeding for NGS data
** PCAngsd|PCA, selection and inbreeding for NGS data
* Relate
* evalAdmix
** Relate|Local IBD relatedness
** evalAdmix| evaluate admixture fit
** Relate#Download_and_Installation|Download
** evalAdmix#Download_and_Installation|Download
** Relate#Manual|Manual
** evalAdmix#Run_command_example | Example
** Relate#Citation|citation
** evalAdmix#Input_File| Input files
** Relate#Change_log|Log
* BAMSE
** BAMSE| Bayesian Association of multiple SNPs
* CATS
** CATS|power for two stage GWAS
* NGSadmix
* NGSadmix
**ngsAdmix|Population Structure for NGS data
**ngsAdmix|Population Structure for NGS data
** NgsAdmix#Installation|Download
** NgsAdmix#Download_and_Installation|Download
** NgsAdmix#Run_example | Example
** NgsAdmix#Run_command_example | Example
** NgsAdmix#Input_Files| Input files
** NgsAdmix#Input_File| Input files
** NgsAdmix#citation|Citation
** NgsAdmixTutorial|Tutorial
* asaMap
* asaMap
** asaMap#Installation|Download
** asaMap| Ancestry-specific association mapping in admixed populations
** asaMap#Run_example | Example
** asaMap#Download| Download
** asaMap#Example| Example
** asaMap#Input_Files| Input files
** asaMap#Input_Files| Input files
** asaMap#citation|Citation
** asaMap#Citation| Citation
 
* fastNGSadmix
* fastNGSadmix
** fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
** FastNGSadmix#Download| Download
** FastNGSadmix#Download| Download
** FastNGSadmix#Input_Files| Input files
** FastNGSadmix#Input_Files| Input files
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** relateAdmix#Run_example | Example
** relateAdmix#Run_example | Example
* LDadmix
* LDadmix
* Relate
** Relate|Local IBD relatedness
** Relate#Download_and_Installation|Download
** Relate#Manual|Manual
** Relate#Citation|citation
** Relate#Change_log|Log
* BAMSE
** BAMSE| Bayesian Association of multiple SNPs
* CATS
** CATS|power for two stage GWAS
* R scripts
* R scripts
** Rscripts| various R scripts
** Rscripts| various R scripts

Latest revision as of 14:19, 18 July 2019

  • Main
  • ANGSD
  • NgsRelate
  • PCAngsd
    • PCAngsd|PCA, selection and inbreeding for NGS data
  • evalAdmix
    • evalAdmix| evaluate admixture fit
    • evalAdmix#Download_and_Installation|Download
    • evalAdmix#Run_command_example | Example
    • evalAdmix#Input_File| Input files
  • NGSadmix
    • ngsAdmix|Population Structure for NGS data
    • NgsAdmix#Download_and_Installation|Download
    • NgsAdmix#Run_command_example | Example
    • NgsAdmix#Input_File| Input files
    • NgsAdmixTutorial|Tutorial
  • asaMap
    • asaMap| Ancestry-specific association mapping in admixed populations
    • asaMap#Download| Download
    • asaMap#Example| Example
    • asaMap#Input_Files| Input files
    • asaMap#Citation| Citation
  • fastNGSadmix
    • fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
    • FastNGSadmix#Download| Download
    • FastNGSadmix#Input_Files| Input files
    • FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
    • FastNGSadmix#PCA| PCA
    • FastNGSadmix#Making_a_reference_panel| Making a reference panel
    • FastNGSadmix#Human_reference_panels| Human reference panels
    • FastNGSadmix#Citation| Citation
  • relateAdmix
    • relateAdmix|Relatedness estimation for admixed individuals
    • relateAdmix#Installation|Download
    • relateAdmix#Run_example | Example
  • LDadmix
  • Relate
    • Relate|Local IBD relatedness
    • Relate#Download_and_Installation|Download
    • Relate#Manual|Manual
    • Relate#Citation|citation
    • Relate#Change_log|Log
  • BAMSE
    • BAMSE| Bayesian Association of multiple SNPs
  • CATS
    • CATS|power for two stage GWAS
  • R scripts
    • Rscripts| various R scripts
  • navigation
  • SEARCH
  • TOOLBOX
  • LANGUAGES
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