NgsAdmix: Difference between revisions

From software
Jump to navigation Jump to search
No edit summary
(Replaced content with "NGSadmix is a tool for estimating individual admixture proportions low depth sequencing data based on genotype likelihoods The software including tutorials can be found here https://github.com/aalbrechtsen/NGSadmix")
Tag: Replaced
 
(112 intermediate revisions by 4 users not shown)
Line 1: Line 1:
This will contain the program called NGSadmix, which is a very nice tool for finding admixture. It is based on genotype likelihoods or genotype probabilities.
NGSadmix is a tool for estimating individual admixture proportions low depth sequencing data based on genotype likelihoods  
It is a fancy multithreaded c/c++ program


=Installation=
The software including tutorials can be found here
 
https://github.com/aalbrechtsen/NGSadmix
<pre>
wget popgen.dk/software/NGSadmix/ngsadmix32.cpp
g++ ngsadmix32.cpp -O3 -lpthread -lz -o NGSadmix
</pre>
 
=Input Files=
The current input files are the widely used beagle inputfiles, or beagle imputed outputfiles [http://faculty.washington.edu/browning/beagle/beagle.html]. We recommend [[ANGSD]] for easy transformation of Next generation sequencing data to beagle format.
 
 
=log=
* v32 june 25-2013; modified code such that it now compiles on OSX
* v31 june 24-2013; First public version.

Latest revision as of 09:28, 24 March 2026

NGSadmix is a tool for estimating individual admixture proportions low depth sequencing data based on genotype likelihoods

The software including tutorials can be found here https://github.com/aalbrechtsen/NGSadmix

Retrieved from "https://www.popgen.dk/software/index.php?title=NgsAdmix&oldid=1488"