MediaWiki:Sidebar: Difference between revisions

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* PCAngsd  
* PCAngsd  
** PCAngsd|PCA, selection and inbreeding for NGS data
** PCAngsd|PCA, selection and inbreeding for NGS data
* Relate
* evalAdmix
** Relate|Local IBD relatedness
** evalAdmix| evaluate admixture fit
** Relate#Download_and_Installation|Download
** evalAdmix#Download_and_Installation|Download
** Relate#Manual|Manual
** evalAdmix#Run_command_example | Example
** Relate#Citation|citation
** evalAdmix#Input_File| Input files
** Relate#Change_log|Log
* NGSadmix#Download_and_Installation|Download
* NGSadmix
**ngsAdmix|Population Structure for NGS data
**ngsAdmix|Population Structure for NGS data
** NgsAdmix#Download_and_Installation|Download
** NgsAdmix#Download_and_Installation|Download
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** relateAdmix#Run_example | Example
** relateAdmix#Run_example | Example
* LDadmix
* LDadmix
* Relate
** Relate|Local IBD relatedness
** Relate#Download_and_Installation|Download
** Relate#Manual|Manual
** Relate#Citation|citation
** Relate#Change_log|Log
* BAMSE
* BAMSE
** BAMSE| Bayesian Association of multiple SNPs
** BAMSE| Bayesian Association of multiple SNPs

Revision as of 14:19, 18 July 2019

  • Main
  • ANGSD
  • NgsRelate
  • PCAngsd
    • PCAngsd|PCA, selection and inbreeding for NGS data
  • evalAdmix
    • evalAdmix| evaluate admixture fit
    • evalAdmix#Download_and_Installation|Download
    • evalAdmix#Run_command_example | Example
    • evalAdmix#Input_File| Input files
  • NGSadmix#Download_and_Installation|Download
    • ngsAdmix|Population Structure for NGS data
    • NgsAdmix#Download_and_Installation|Download
    • NgsAdmix#Run_command_example | Example
    • NgsAdmix#Input_File| Input files
    • NgsAdmixTutorial|Tutorial
  • asaMap
    • asaMap| Ancestry-specific association mapping in admixed populations
    • asaMap#Download| Download
    • asaMap#Example| Example
    • asaMap#Input_Files| Input files
    • asaMap#Citation| Citation
  • fastNGSadmix
    • fastNGSadmix| admixture proportions and principal component analysis of a single NGS sample
    • FastNGSadmix#Download| Download
    • FastNGSadmix#Input_Files| Input files
    • FastNGSadmix#Running_fastNGSadmix| Running fastNGSadmix
    • FastNGSadmix#PCA| PCA
    • FastNGSadmix#Making_a_reference_panel| Making a reference panel
    • FastNGSadmix#Human_reference_panels| Human reference panels
    • FastNGSadmix#Citation| Citation
  • relateAdmix
    • relateAdmix|Relatedness estimation for admixed individuals
    • relateAdmix#Installation|Download
    • relateAdmix#Run_example | Example
  • LDadmix
  • Relate
    • Relate|Local IBD relatedness
    • Relate#Download_and_Installation|Download
    • Relate#Manual|Manual
    • Relate#Citation|citation
    • Relate#Change_log|Log
  • BAMSE
    • BAMSE| Bayesian Association of multiple SNPs
  • CATS
    • CATS|power for two stage GWAS
  • R scripts
    • Rscripts| various R scripts
  • navigation
  • SEARCH
  • TOOLBOX
  • LANGUAGES
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