ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.918/0.919 on github), see Change_log for changes, and download it here.

Authors

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Major programmer

Thorfinn Korneliussen thorfinn@binf.ku.dk

Minor programmer

anders albrechtsen albrecht@binf.ku.dk


Fililpe Vieira has been implementing changes to the frequency estimator. analysisMaf.cpp -> analysisMaf.inbreed.cpp some changes in angsd_realSFS.cpp And the analysisHWE.cpp

Matteo has been implementing the Fst and PCA which uses output from angsd.


Other people include

Rasmus Nielsen rasmus@binf.ku.dk

Line Skotte flotte@skotte.dk


Disclaimer

Some code is very 'inspired' by SAMtools (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by SOAPsnp