User contributions for Thorfinn

11 October 2012

• 21:2721:27, 11 October 2012 diff hist +62‎ Citing angsd ‎ →‎Methods
• 14:0414:04, 11 October 2012 diff hist +52‎ Major Minor ‎ →‎From genotype likelihood data
• 14:0414:04, 11 October 2012 diff hist −5‎ Major Minor ‎ →‎From genotype likelihood data

10 October 2012

• 17:3717:37, 10 October 2012 diff hist +43‎ SFS Estimation ‎No edit summary
• 17:3417:34, 10 October 2012 diff hist +11‎ SFS Estimation ‎No edit summary
• 17:3217:32, 10 October 2012 diff hist +39‎ SFS Estimation ‎No edit summary
• 17:3117:31, 10 October 2012 diff hist +4‎ SFS Estimation ‎ →‎Example
• 17:3017:30, 10 October 2012 diff hist +202‎ SFS Estimation ‎No edit summary
• 17:2417:24, 10 October 2012 diff hist 0‎ Citing angsd ‎No edit summary
• 17:2317:23, 10 October 2012 diff hist +4‎ SFS Estimation ‎ →‎Example
• 17:2317:23, 10 October 2012 diff hist +252‎ SFS Estimation ‎ →‎Example
• 17:2117:21, 10 October 2012 diff hist +148‎ SFS Estimation ‎No edit summary
• 17:1717:17, 10 October 2012 diff hist +570‎ SFS Estimation ‎No edit summary
• 14:2614:26, 10 October 2012 diff hist +4‎ SFS Estimation ‎No edit summary
• 14:2314:23, 10 October 2012 diff hist +24‎ SFS Estimation ‎ →‎realSFS
• 14:1814:18, 10 October 2012 diff hist +95‎ SFS Estimation ‎ →‎realSFS
• 14:0814:08, 10 October 2012 diff hist +14‎ SFS Estimation ‎ →‎realSFS
• 14:0714:07, 10 October 2012 diff hist −1,036‎ SFS Estimation ‎No edit summary
• 13:2313:23, 10 October 2012 diff hist +98‎ SFS Estimation ‎No edit summary
• 13:2213:22, 10 October 2012 diff hist −6‎ Beagle input ‎No edit summary
• 13:2213:22, 10 October 2012 diff hist +23‎ Beagle input ‎No edit summary
• 13:1413:14, 10 October 2012 diff hist +77‎ Citing angsd ‎ →‎Methods
• 13:1313:13, 10 October 2012 diff hist +84‎ Nielsen2012 ‎No edit summary
• 13:1213:12, 10 October 2012 diff hist +85‎ Nielsen2012 ‎No edit summary
• 13:1113:11, 10 October 2012 diff hist +105‎ N Nielsen2012 ‎ Created page with "SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data"
• 13:0613:06, 10 October 2012 diff hist 0‎ Genotype Likelihoods ‎ →‎Genotype likelihoods from alignments
• 13:0613:06, 10 October 2012 diff hist −1‎ Genotype Likelihoods ‎ →‎Genotype likelihoods from alignments
• 13:0313:03, 10 October 2012 diff hist +1‎ Installation ‎ →‎Unix
• 13:0213:02, 10 October 2012 diff hist 0‎ Installation ‎ →‎Download
• 13:0213:02, 10 October 2012 diff hist −2‎ ANGSD ‎No edit summary

25 September 2012

• 17:4117:41, 25 September 2012 diff hist +450‎ Filters ‎ →‎Selected Sites
• 16:3216:32, 25 September 2012 diff hist +1‎ Installation ‎ →‎Download
• 16:3216:32, 25 September 2012 diff hist 0‎ ANGSD ‎No edit summary
• 03:0003:00, 25 September 2012 diff hist +76‎ Genotype Likelihoods ‎ →‎output genotype likelihoods
• 02:3802:38, 25 September 2012 diff hist +211‎ Change log ‎ →‎Version notes
• 02:3702:37, 25 September 2012 diff hist +56‎ Genotype Likelihoods ‎ →‎soapSNP
• 02:3502:35, 25 September 2012 diff hist +81‎ Genotype Likelihoods ‎ →‎options
• 02:3502:35, 25 September 2012 diff hist −166‎ Genotype Likelihoods ‎ →‎options
• 02:3402:34, 25 September 2012 diff hist +1‎ ANGSD ‎No edit summary

22 September 2012

• 23:3523:35, 22 September 2012 diff hist −60‎ SFS Estimation ‎ →‎realSFS
• 19:4319:43, 22 September 2012 diff hist +1‎ Installation ‎ →‎Unix
• 19:4219:42, 22 September 2012 diff hist +2‎ Installation ‎ →‎Download
• 19:4219:42, 22 September 2012 diff hist +86‎ Installation ‎ →‎Download
• 19:3919:39, 22 September 2012 diff hist +45‎ ANGSD ‎No edit summary

2 July 2012

• 10:3710:37, 2 July 2012 diff hist +559‎ Genotype Likelihoods ‎ →‎soapSNP

29 June 2012

• 14:3714:37, 29 June 2012 diff hist −16‎ Regionfile ‎No edit summary current
• 14:3614:36, 29 June 2012 diff hist −1‎ Regionfile ‎No edit summary
• 14:3614:36, 29 June 2012 diff hist +664‎ N Regionfile ‎ Created page with "When your inputfile is bam files, then you can specify region You can specify a specific region using the following 3 ways: <examople> ./angsd -bam bamfiles.list -r chr20: ...."

22 June 2012

• 21:1821:18, 22 June 2012 diff hist +137‎ N Glf files ‎ Created page with "DRAGON ;-doGlf 1; tglf binary 10xdouble per sample ;-doGlf 2; beagle output gz requires -doMajorMinor 1/2 ;-doGlf otehrwise text output"
• 15:0315:03, 22 June 2012 diff hist +3‎ Genotype Likelihoods ‎ →‎Kim et al.