ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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3 October 2013
- 15:0315:03, 3 October 2013 diff hist +70 Korneliussen2013 No edit summary current
- 15:0215:02, 3 October 2013 diff hist +60 Korneliussen2013 No edit summary
- 15:0115:01, 3 October 2013 diff hist +78 Thetas,Tajima,Neutrality tests No edit summary
2 October 2013
- 20:0720:07, 2 October 2013 diff hist +1,888 Korneliussen2013 →Bibtex
- 19:3419:34, 2 October 2013 diff hist +33 Thetas,Tajima,Neutrality tests No edit summary
- 19:3219:32, 2 October 2013 diff hist +262 N Korneliussen2013 Created page with "Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen and Rasmus Nielsen; Calculation of Tajima's D and other neutrality test statistics from low depth next-generation se..."
- 19:2819:28, 2 October 2013 diff hist +57 Citing angsd →SFS estimation
30 September 2013
- 09:1709:17, 30 September 2013 diff hist −10 Base quality →options current
- 09:1609:16, 30 September 2013 diff hist −51 Allele Counts →options
- 09:1509:15, 30 September 2013 diff hist −5 Allele Counts →options
- 09:1409:14, 30 September 2013 diff hist −27 Filters →Number of non missing individuals
26 September 2013
- 11:0511:05, 26 September 2013 diff hist +501 SFS Estimation →NB
12 September 2013
- 20:0620:06, 12 September 2013 diff hist +44 Change log →Version notes
- 20:0520:05, 12 September 2013 diff hist 0 Installation →Unix
- 20:0320:03, 12 September 2013 diff hist 0 ANGSD No edit summary
- 20:0220:02, 12 September 2013 diff hist +15 MediaWiki:Sidebar No edit summary
- 20:0120:01, 12 September 2013 diff hist +102 Plink →Output files
- 20:0020:00, 12 September 2013 diff hist +1,261 Plink →Output files
- 19:5819:58, 12 September 2013 diff hist +317 Plink →Output files
- 19:5719:57, 12 September 2013 diff hist −6 Plink →Output files
- 19:5619:56, 12 September 2013 diff hist +82 Plink →Example
- 19:5419:54, 12 September 2013 diff hist +46 Plink →References
- 19:5419:54, 12 September 2013 diff hist +245 Plink No edit summary
- 19:4919:49, 12 September 2013 diff hist +16 Plink No edit summary
- 19:4819:48, 12 September 2013 diff hist +11 Plink No edit summary
- 19:4819:48, 12 September 2013 diff hist +478 Plink No edit summary
- 19:4419:44, 12 September 2013 diff hist +128 Plink No edit summary
- 19:4219:42, 12 September 2013 diff hist +174 Plink No edit summary
- 19:4119:41, 12 September 2013 diff hist +69 Plink No edit summary
- 19:4019:40, 12 September 2013 diff hist +110 N Plink Created page with "From version 0.549 we now support plink output files. Currently we only support the transposed '.tfam'/'.tped'"
4 September 2013
- 20:0320:03, 4 September 2013 diff hist +297 ANGSD No edit summary
- 20:0020:00, 4 September 2013 diff hist 0 Installation No edit summary
22 July 2013
- 15:4215:42, 22 July 2013 diff hist +51 Thetas,Tajima,Neutrality tests No edit summary
- 15:3615:36, 22 July 2013 diff hist +39 MediaWiki:Sidebar No edit summary
18 July 2013
- 01:4001:40, 18 July 2013 diff hist +82 NGSadmix No edit summary
- 01:2801:28, 18 July 2013 diff hist +3 Sites →Selected Sites
- 01:2701:27, 18 July 2013 diff hist +1 Sites →Selected Sites
- 01:2601:26, 18 July 2013 diff hist +82 Sites →Selected Sites
- 01:2501:25, 18 July 2013 diff hist −5 Sites →Number of non missing individuals
- 01:2501:25, 18 July 2013 diff hist +332 Sites →Selected Sites
- 01:2301:23, 18 July 2013 diff hist −7 Sites →Selected Sites
- 01:2201:22, 18 July 2013 diff hist −782 Sites →Selected Sites
- 01:1601:16, 18 July 2013 diff hist −116 Sites →Main
- 01:1601:16, 18 July 2013 diff hist +1 Filters →Version Notice
- 01:1501:15, 18 July 2013 diff hist +129 Filters No edit summary
- 01:1401:14, 18 July 2013 diff hist +90 Sites No edit summary
- 01:1301:13, 18 July 2013 diff hist +4,297 N Sites Created page with "In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options. NB the afile.keep is still beta and some use..."
- 01:1201:12, 18 July 2013 diff hist +93 ANGSD No edit summary
- 01:0201:02, 18 July 2013 diff hist +205 Installation →Install
16 July 2013
- 17:4917:49, 16 July 2013 diff hist 0 MediaWiki:Sidebar No edit summary