ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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30 June 2014
- 12:2012:20, 30 June 2014 diff hist +5 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 12:1912:19, 30 June 2014 diff hist −1 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 12:1912:19, 30 June 2014 diff hist +516 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 12:1812:18, 30 June 2014 diff hist 0 RealSFS No edit summary
- 12:1812:18, 30 June 2014 diff hist −2 MediaWiki:Sidebar No edit summary
- 12:1512:15, 30 June 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Example
- 12:1312:13, 30 June 2014 diff hist −1 SFS Estimation →Folded spectra
- 12:1212:12, 30 June 2014 diff hist +93 Quick Start →Finding the SFS
- 12:1112:11, 30 June 2014 diff hist −1 SFS Estimation No edit summary
- 12:0712:07, 30 June 2014 diff hist 0 N File:SmallFolded.png No edit summary current
- 12:0712:07, 30 June 2014 diff hist +3 SFS Estimation →Folded spectra
- 12:0712:07, 30 June 2014 diff hist +85 SFS Estimation →Folded spectra
- 12:0212:02, 30 June 2014 diff hist +5 SFS Estimation →Folded spectra
- 12:0212:02, 30 June 2014 diff hist +17 SFS Estimation →Folded spectra
- 12:0012:00, 30 June 2014 diff hist 0 MediaWiki:Sidebar No edit summary
- 11:5911:59, 30 June 2014 diff hist 0 N File:SfsSmallFine.png No edit summary current
- 11:5911:59, 30 June 2014 diff hist +12 SFS Estimation →How to plot
- 11:4511:45, 30 June 2014 diff hist −189 SFS Estimation →NB
- 11:4411:44, 30 June 2014 diff hist −9 SFS Estimation →Interpretation of the emOptim2 output file
- 11:4411:44, 30 June 2014 diff hist +123 SFS Estimation →Example
- 11:4311:43, 30 June 2014 diff hist 0 N File:SfsSmall.png No edit summary current
- 11:4211:42, 30 June 2014 diff hist +28 SFS Estimation →Example
- 11:3311:33, 30 June 2014 diff hist −1 SFS Estimation →Example
- 11:3211:32, 30 June 2014 diff hist −3 SFS Estimation →Example
- 11:3211:32, 30 June 2014 diff hist −334 SFS Estimation →Example
- 11:1211:12, 30 June 2014 diff hist −1 SFS Estimation →Example
- 11:1211:12, 30 June 2014 diff hist +69 SFS Estimation →Example
- 11:0511:05, 30 June 2014 diff hist +91 Thetas,Tajima,Neutrality tests →Example
- 11:0311:03, 30 June 2014 diff hist +600 Thetas,Tajima,Neutrality tests →Example
- 11:0311:03, 30 June 2014 diff hist −1 Thetas,Tajima,Neutrality tests →Example
- 11:0211:02, 30 June 2014 diff hist +20 Quick Start →Generate Beagle Likelihood files
- 10:5410:54, 30 June 2014 diff hist 0 Installation No edit summary
- 10:5310:53, 30 June 2014 diff hist 0 Installation No edit summary
- 10:5310:53, 30 June 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 10:5310:53, 30 June 2014 diff hist +60 Change log →Latest
- 10:3810:38, 30 June 2014 diff hist −16 Thetas,Tajima,Neutrality tests →Example
- 10:3810:38, 30 June 2014 diff hist +103 Thetas,Tajima,Neutrality tests →Example
- 10:3710:37, 30 June 2014 diff hist +60 Quick Start →Ancestral fasta file for hg19
- 10:0610:06, 30 June 2014 diff hist +19 Quick Start →Ancestral fasta file for hg19
- 10:0510:05, 30 June 2014 diff hist +209 Quick Start →Ancestral fasta file for hg19
- 10:0110:01, 30 June 2014 diff hist +74 Quick Start →Download and prepare
- 09:5909:59, 30 June 2014 diff hist 0 Thetas,Tajima,Neutrality tests No edit summary
28 June 2014
- 20:0920:09, 28 June 2014 diff hist +13 Contamination No edit summary
- 09:0509:05, 28 June 2014 diff hist −6 Contamination →Interpretation of outputfiles
- 09:0309:03, 28 June 2014 diff hist 0 Contamination →method
27 June 2014
- 15:4715:47, 27 June 2014 diff hist +8 Contamination No edit summary
- 14:4614:46, 27 June 2014 diff hist 0 Contamination No edit summary
- 14:4414:44, 27 June 2014 diff hist +15 SFS Estimation →Example
- 14:2414:24, 27 June 2014 diff hist +264 SFS Estimation →Example
- 14:1914:19, 27 June 2014 diff hist 0 RealSFS No edit summary