ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
Jump to navigation
Jump to search
28 August 2014
- 15:3715:37, 28 August 2014 diff hist −1 Input →glf
25 August 2014
- 21:5921:59, 25 August 2014 diff hist −140 Change log →Latest
- 21:5521:55, 25 August 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 21:5421:54, 25 August 2014 diff hist +7 Installation No edit summary
19 August 2014
- 17:0917:09, 19 August 2014 diff hist +39 Contamination No edit summary
13 August 2014
- 18:4918:49, 13 August 2014 diff hist −18 MsToGlf →Two populations
- 18:1918:19, 13 August 2014 diff hist +7 2d SFS Estimation →Example
- 18:1818:18, 13 August 2014 diff hist +26 MsToGlf →Two populations
12 August 2014
- 13:4913:49, 12 August 2014 diff hist +16 2d SFS Estimation No edit summary
- 13:2913:29, 12 August 2014 diff hist +11 2d SFS Estimation →Example
- 11:1111:11, 12 August 2014 diff hist 0 Glcomparison No edit summary
- 11:1011:10, 12 August 2014 diff hist +259 Genotype Likelihoods →Simple Text Format
- 11:1011:10, 12 August 2014 diff hist +2 SFS Estimation →Which genotype likelihood model should I choose
- 11:1011:10, 12 August 2014 diff hist +141 SFS Estimation →Which genotype likelihood model should I choose
- 11:0711:07, 12 August 2014 diff hist +66 SFS Estimation →Which genotype likelihood model should I choose
- 11:0611:06, 12 August 2014 diff hist +50 SFS Estimation →How to plot
- 11:0511:05, 12 August 2014 diff hist +33 Glcomparison No edit summary
- 11:0411:04, 12 August 2014 diff hist +550 Glcomparison No edit summary
- 11:0311:03, 12 August 2014 diff hist +420 Glcomparison No edit summary
- 10:5710:57, 12 August 2014 diff hist +1,452 Glcomparison No edit summary
- 10:5410:54, 12 August 2014 diff hist −63 Glcomparison No edit summary
- 10:5310:53, 12 August 2014 diff hist +1,004 N Glcomparison Created page with "For some analysis the choice of GL model will make a huge impact, this is shown in the example where we estimate the sfs using '''-GL 1''' and '''-GL 2''', for two list of BAM..."
- 10:3710:37, 12 August 2014 diff hist 0 N File:Glcomparison.png No edit summary current
1 August 2014
- 11:0211:02, 1 August 2014 diff hist +64 Contamination No edit summary
- 10:5910:59, 1 August 2014 diff hist +12 Contamination No edit summary
- 10:5810:58, 1 August 2014 diff hist +117 Contamination No edit summary
- 10:5710:57, 1 August 2014 diff hist +9 Contamination No edit summary
31 July 2014
- 10:5510:55, 31 July 2014 diff hist −14 Misc example No edit summary current
- 10:5510:55, 31 July 2014 diff hist +18 MsToGlf →Two populations
- 10:5410:54, 31 July 2014 diff hist +25 MsToGlf →Two populations
- 10:5410:54, 31 July 2014 diff hist +21 MsToGlf →Standard neutral model
22 July 2014
- 20:0420:04, 22 July 2014 diff hist +7 Quick Start →Ancestral fasta file for hg19
- 20:0220:02, 22 July 2014 diff hist +3 Quick Start →Ancestral fasta file for hg19
- 19:4919:49, 22 July 2014 diff hist +163 Quick Start →Ancestral fasta file for hg19
20 July 2014
- 08:5808:58, 20 July 2014 diff hist +61 Change log No edit summary
- 08:5508:55, 20 July 2014 diff hist 0 Installation →Unix
- 08:5508:55, 20 July 2014 diff hist 0 Installation No edit summary
- 08:5508:55, 20 July 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
17 July 2014
- 18:5318:53, 17 July 2014 diff hist +49 Bugs No edit summary
11 July 2014
- 08:1608:16, 11 July 2014 diff hist +47 N Supersim Created page with "Small program to simulate genotype likelihoods."
3 July 2014
- 12:5812:58, 3 July 2014 diff hist +89 RealSFS →Brief overview
- 08:4108:41, 3 July 2014 diff hist +83 Installation →Download
- 08:4008:40, 3 July 2014 diff hist +60 ANGSD No edit summary
- 08:3908:39, 3 July 2014 diff hist −31 MediaWiki:Sitenotice No edit summary
- 08:3708:37, 3 July 2014 diff hist +31 MediaWiki:Sitenotice No edit summary
30 June 2014
- 13:1513:15, 30 June 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Step 3a: Estimate Tajimas D and other statistics
- 13:1513:15, 30 June 2014 diff hist +2 Thetas,Tajima,Neutrality tests →Step 1: Finding a 'global estimate' of the SFS
- 13:1513:15, 30 June 2014 diff hist +8 Thetas,Tajima,Neutrality tests →Full command list for below examples
- 13:1413:14, 30 June 2014 diff hist +114 Quick Start →Estimating thetas, neutrality test statistics
- 13:1213:12, 30 June 2014 diff hist +48 Quick Start →Finding the SFS