User contributions for Thorfinn

30 July 2015

• 15:3815:38, 30 July 2015 diff hist −102‎ MediaWiki:Sitenotice ‎No edit summary
• 15:2715:27, 30 July 2015 diff hist +6,807‎ N Fst correctness ‎ Created page with "= 3 Populations simulated data= <pre> msms -ms 44 10 -t 930 -r 400 -I 3 12 14 18 -n 1 1.682020 -n 2 3.736830 -n 3 7.292050 -eg 0 2 116.010723 -eg 0 3 160.246047 -ma x 0.881098..." current
• 15:2615:26, 30 July 2015 diff hist −6,809‎ Fst ‎No edit summary
• 15:2215:22, 30 July 2015 diff hist +242‎ N PCA ‎ Created page with "Matteo Fumagalli has been working on methods for doing PCA/Covariance based on ANGSD output files. The main documentation for this is found here: https://github.com/mfumagall..."
• 15:2115:21, 30 July 2015 diff hist −24‎ Fst PCA ‎No edit summary current
• 15:2115:21, 30 July 2015 diff hist +86‎ Fst PCA ‎No edit summary
• 15:2015:20, 30 July 2015 diff hist −10,708‎ Fst PCA ‎No edit summary
• 15:1915:19, 30 July 2015 diff hist +3‎ MediaWiki:Sidebar ‎No edit summary
• 15:1715:17, 30 July 2015 diff hist −2‎ Fst ‎ →‎3 Populations simulated data
• 15:1615:16, 30 July 2015 diff hist −2‎ Fst ‎ →‎Sliding Window output
• 15:1615:16, 30 July 2015 diff hist −2‎ Fst ‎ →‎3 Populations real data
• 15:1615:16, 30 July 2015 diff hist −421‎ Fst ‎No edit summary
• 15:1415:14, 30 July 2015 diff hist −336‎ Fst ‎No edit summary
• 15:1415:14, 30 July 2015 diff hist +11,331‎ N Fst ‎ Created page with "Matteo Fumagalli has been working on methods to estimate Fst and doing PCA/Covariance based on ANGSD output files. The main documentation for this is found here: https://gith..."
• 14:5614:56, 30 July 2015 diff hist +247‎ Fst PCA ‎No edit summary
• 14:5414:54, 30 July 2015 diff hist +111‎ N Pbs ‎ Created page with "See Fst PCA for examples on how to obtain the pbs statistics in the fst output if you supply 3 populations."
• 14:5314:53, 30 July 2015 diff hist +44‎ MediaWiki:Sidebar ‎No edit summary
• 14:5114:51, 30 July 2015 diff hist +414‎ Fst PCA ‎ →‎Sliding Window output
• 14:5014:50, 30 July 2015 diff hist −220‎ Fst PCA ‎ →‎3 Populations real data
• 14:5014:50, 30 July 2015 diff hist +374‎ Fst PCA ‎ →‎3 Populations real data
• 14:4814:48, 30 July 2015 diff hist +98‎ Fst PCA ‎ →‎3 Populations real data
• 13:4513:45, 30 July 2015 diff hist −2‎ Fst PCA ‎ →‎3 Populations real data
• 13:4213:42, 30 July 2015 diff hist −3‎ Fst PCA ‎ →‎3 Populations real data
• 13:4113:41, 30 July 2015 diff hist −3‎ Fst PCA ‎ →‎3 Populations real data

29 July 2015

• 15:3415:34, 29 July 2015 diff hist +49‎ SFS Estimation ‎ →‎Options

28 July 2015

• 14:4714:47, 28 July 2015 diff hist −4‎ Genotype Likelihoods ‎ →‎SYK genotype likelihoods
• 14:4614:46, 28 July 2015 diff hist +1,652‎ Genotype Likelihoods ‎No edit summary

22 July 2015

• 17:5717:57, 22 July 2015 diff hist +3‎ RealSFS ‎No edit summary
• 17:5717:57, 22 July 2015 diff hist −2‎ RealSFS ‎No edit summary
• 17:5617:56, 22 July 2015 diff hist +68‎ RealSFS ‎No edit summary
• 17:5217:52, 22 July 2015 diff hist +11‎ RealSFS ‎ →‎2dsfs
• 17:5217:52, 22 July 2015 diff hist +11‎ RealSFS ‎ →‎1d SFS
• 17:5217:52, 22 July 2015 diff hist +295‎ RealSFS ‎ →‎Printing the SAF
• 17:5017:50, 22 July 2015 diff hist +178‎ RealSFS ‎ →‎Brief overview
• 17:4617:46, 22 July 2015 diff hist +157‎ RealSFS ‎No edit summary
• 17:4317:43, 22 July 2015 diff hist +2‎ SFS Estimation ‎ →‎Using NGStools
• 17:4317:43, 22 July 2015 diff hist +110‎ SFS Estimation ‎ →‎safv3 comparison
• 17:4217:42, 22 July 2015 diff hist +222‎ RealSFS ‎ →‎Using NGStools/NGSpopgen
• 17:3917:39, 22 July 2015 diff hist +288‎ RealSFS ‎ →‎Using NGStools
• 17:3517:35, 22 July 2015 diff hist +18‎ RealSFS ‎ →‎-nSites

9 July 2015

• 14:4814:48, 9 July 2015 diff hist +59‎ SFS Estimation ‎ →‎Brief Overview
• 14:4714:47, 9 July 2015 diff hist +235‎ RealSFS ‎ →‎NB

20 June 2015

• 09:2609:26, 20 June 2015 diff hist +26‎ MediaWiki:Sidebar ‎No edit summary
• 09:2309:23, 20 June 2015 diff hist +84‎ N NgsRelate ‎ Created page with "ngsrelate has its very own website http://www.popgen.dk/software/index.php/NgsRelate" current

18 June 2015

• 14:0914:09, 18 June 2015 diff hist +14‎ MediaWiki:Sitenotice ‎No edit summary
• 14:0614:06, 18 June 2015 diff hist +403‎ Installation ‎ Undo revision 2514 by Thorfinn (talk)
• 13:4913:49, 18 June 2015 diff hist +1‎ MediaWiki:Sitenotice ‎No edit summary
• 13:4913:49, 18 June 2015 diff hist +87‎ MediaWiki:Sitenotice ‎No edit summary
• 11:2811:28, 18 June 2015 diff hist −403‎ Installation ‎No edit summary

17 June 2015

• 16:4216:42, 17 June 2015 diff hist +2‎ Fst PCA ‎ →‎Sliding Window output