ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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30 July 2015
- 15:3815:38, 30 July 2015 diff hist −102 MediaWiki:Sitenotice No edit summary
- 15:2715:27, 30 July 2015 diff hist +6,807 N Fst correctness Created page with "= 3 Populations simulated data= <pre> msms -ms 44 10 -t 930 -r 400 -I 3 12 14 18 -n 1 1.682020 -n 2 3.736830 -n 3 7.292050 -eg 0 2 116.010723 -eg 0 3 160.246047 -ma x 0.881098..." current
- 15:2615:26, 30 July 2015 diff hist −6,809 Fst No edit summary
- 15:2215:22, 30 July 2015 diff hist +242 N PCA Created page with "Matteo Fumagalli has been working on methods for doing PCA/Covariance based on ANGSD output files. The main documentation for this is found here: https://github.com/mfumagall..."
- 15:2115:21, 30 July 2015 diff hist −24 Fst PCA No edit summary current
- 15:2115:21, 30 July 2015 diff hist +86 Fst PCA No edit summary
- 15:2015:20, 30 July 2015 diff hist −10,708 Fst PCA No edit summary
- 15:1915:19, 30 July 2015 diff hist +3 MediaWiki:Sidebar No edit summary
- 15:1715:17, 30 July 2015 diff hist −2 Fst →3 Populations simulated data
- 15:1615:16, 30 July 2015 diff hist −2 Fst →Sliding Window output
- 15:1615:16, 30 July 2015 diff hist −2 Fst →3 Populations real data
- 15:1615:16, 30 July 2015 diff hist −421 Fst No edit summary
- 15:1415:14, 30 July 2015 diff hist −336 Fst No edit summary
- 15:1415:14, 30 July 2015 diff hist +11,331 N Fst Created page with "Matteo Fumagalli has been working on methods to estimate Fst and doing PCA/Covariance based on ANGSD output files. The main documentation for this is found here: https://gith..."
- 14:5614:56, 30 July 2015 diff hist +247 Fst PCA No edit summary
- 14:5414:54, 30 July 2015 diff hist +111 N Pbs Created page with "See Fst PCA for examples on how to obtain the pbs statistics in the fst output if you supply 3 populations."
- 14:5314:53, 30 July 2015 diff hist +44 MediaWiki:Sidebar No edit summary
- 14:5114:51, 30 July 2015 diff hist +414 Fst PCA →Sliding Window output
- 14:5014:50, 30 July 2015 diff hist −220 Fst PCA →3 Populations real data
- 14:5014:50, 30 July 2015 diff hist +374 Fst PCA →3 Populations real data
- 14:4814:48, 30 July 2015 diff hist +98 Fst PCA →3 Populations real data
- 13:4513:45, 30 July 2015 diff hist −2 Fst PCA →3 Populations real data
- 13:4213:42, 30 July 2015 diff hist −3 Fst PCA →3 Populations real data
- 13:4113:41, 30 July 2015 diff hist −3 Fst PCA →3 Populations real data
29 July 2015
- 15:3415:34, 29 July 2015 diff hist +49 SFS Estimation →Options
28 July 2015
- 14:4714:47, 28 July 2015 diff hist −4 Genotype Likelihoods →SYK genotype likelihoods
- 14:4614:46, 28 July 2015 diff hist +1,652 Genotype Likelihoods No edit summary
22 July 2015
- 17:5717:57, 22 July 2015 diff hist +3 RealSFS No edit summary
- 17:5717:57, 22 July 2015 diff hist −2 RealSFS No edit summary
- 17:5617:56, 22 July 2015 diff hist +68 RealSFS No edit summary
- 17:5217:52, 22 July 2015 diff hist +11 RealSFS →2dsfs
- 17:5217:52, 22 July 2015 diff hist +11 RealSFS →1d SFS
- 17:5217:52, 22 July 2015 diff hist +295 RealSFS →Printing the SAF
- 17:5017:50, 22 July 2015 diff hist +178 RealSFS →Brief overview
- 17:4617:46, 22 July 2015 diff hist +157 RealSFS No edit summary
- 17:4317:43, 22 July 2015 diff hist +2 SFS Estimation →Using NGStools
- 17:4317:43, 22 July 2015 diff hist +110 SFS Estimation →safv3 comparison
- 17:4217:42, 22 July 2015 diff hist +222 RealSFS →Using NGStools/NGSpopgen
- 17:3917:39, 22 July 2015 diff hist +288 RealSFS →Using NGStools
- 17:3517:35, 22 July 2015 diff hist +18 RealSFS →-nSites
9 July 2015
- 14:4814:48, 9 July 2015 diff hist +59 SFS Estimation →Brief Overview
- 14:4714:47, 9 July 2015 diff hist +235 RealSFS →NB
20 June 2015
- 09:2609:26, 20 June 2015 diff hist +26 MediaWiki:Sidebar No edit summary
- 09:2309:23, 20 June 2015 diff hist +84 N NgsRelate Created page with "ngsrelate has its very own website http://www.popgen.dk/software/index.php/NgsRelate" current
18 June 2015
- 14:0914:09, 18 June 2015 diff hist +14 MediaWiki:Sitenotice No edit summary
- 14:0614:06, 18 June 2015 diff hist +403 Installation Undo revision 2514 by Thorfinn (talk)
- 13:4913:49, 18 June 2015 diff hist +1 MediaWiki:Sitenotice No edit summary
- 13:4913:49, 18 June 2015 diff hist +87 MediaWiki:Sitenotice No edit summary
- 11:2811:28, 18 June 2015 diff hist −403 Installation No edit summary
17 June 2015
- 16:4216:42, 17 June 2015 diff hist +2 Fst PCA →Sliding Window output