Latest revision as of 17:05, 26 February 2015

If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk

Limitation

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-* fix the maxsize of a chr now its 270e6 FIXED
+If you encounter bugs etc, open an issue on github, or send en email thorfinn@binf.ku.dk
-* fix queing of finished threads. MAYBE_FIXED
+=Limitation=
-The above will not have an effect on the results. For large number of samples, the -nQueueSize can be used. If memory is a problem.
-==Limitation==
 * RG tags are not implemented, we doubt we will ever support this.
-* We have observed problems for rna data. This will be fixed at some point but is not a priority.
-==small changes that would be nice==
-* check numSites==0 in all generals: derived classes.
-* check if subdirs exists in outputfiles. Otherwise subtle crash.
-* Only print the FIXED
-###################
- If you have selected more than one MAF estimator we will choose in following order
-. knownminor bfgs
-. knownminor EM
-. unknownminor bfgs
-. unknownminor EM
-. Posterior maf
-###################
-If use has selected multple mafs estimators.
-* write about single bam -i on wiki
-* should rna be implemented
-* make faster the filter output (ok yoda) FIXED >0.500
-* make program wait for finished threads when changing chromosomes FIXED >0.500
-* modify the chromo to the index instead of the chr* FIXED >0.500