ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

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when you do doPost without doMaf gives SEGfault
when you do doPost without doMaf gives SEGfault
7.
use std::isnan std::isinf instead of isnan/isinf such that things work for macos.
when tou do doGeno 2 all the non variable genotypes appear as 2
when tou do doGeno 2 all the non variable genotypes appear as 2


Thorfinn
Thorfinn

Revision as of 18:37, 23 October 2012

1. check numSites==0 in all generals: derived classes.

2. check if subdirs exists in outputfiles. Otherwise subtle crash.

3. Only print the

If you have selected more than one MAF estimator we will choose in following order
   1. knownminor bfgs
   2. knownminor EM
   3. unknownminor bfgs
   4. unknownminor EM
   5. Posterior maf

If use has selected multple mafs estimators.


4. write about single bam -i on wiki


5. fix the maxsize of a chr now its 270e6 Best

6.

when you do doPost without doMaf gives SEGfault


7.

use std::isnan std::isinf instead of isnan/isinf such that things work for macos. when tou do doGeno 2 all the non variable genotypes appear as 2

Thorfinn