ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Bugs: Difference between revisions
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* fix queing of finished threads. | * fix queing of finished threads. | ||
==Limitation== | ==Limitation== | ||
RG tags are not implemented, we doubt we will ever support this. | * RG tags are not implemented, we doubt we will ever support this. | ||
We have observed problems for rna data. This will be fixed at some point but is not a priority. | * We have observed problems for rna data. This will be fixed at some point but is not a priority. | ||
==small changes that would be nice== | ==small changes that would be nice== | ||
Revision as of 23:30, 5 December 2012
- fix the maxsize of a chr now its 270e6
- fix queing of finished threads.
Limitation
- RG tags are not implemented, we doubt we will ever support this.
- We have observed problems for rna data. This will be fixed at some point but is not a priority.
small changes that would be nice
- check numSites==0 in all generals: derived classes.
- check if subdirs exists in outputfiles. Otherwise subtle crash.
- Only print the
If you have selected more than one MAF estimator we will choose in following order 1. knownminor bfgs 2. knownminor EM 3. unknownminor bfgs 4. unknownminor EM 5. Posterior maf
If use has selected multple mafs estimators.
- write about single bam -i on wiki
- should rna be implemented
- make faster the filter output