ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Contamination

From angsd

Revision as of 11:48, 27 June 2014 by Thorfinn (talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to navigation Jump to search

Angsd can estimate contamination, but only for chromosomes that exists in one genecopy (eg chrX for males).

An example are found below:

Retrieved from "https://www.popgen.dk/angsd/index.php?title=Contamination&oldid=2129"