ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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;-minMaf float: only work with sites with a maf above 'float' | |||
;-minKeepInd int; only work with sites with information from atleast int individiduals | |||
;-minLRT float: only work with sits with an LRT>float | |||
Revision as of 12:42, 19 June 2012
In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options.
- -minMaf float
- only work with sites with a maf above 'float'
- -minKeepInd int; only work with sites with information from atleast int individiduals
- -minLRT float
- only work with sits with an LRT>float