ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

HWE and Inbreeding estimates

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Filipe G. Vieira has been extending the ANGSD feature set by

  1. A method for estimating inbreeding (deviation from Hardy-Weinberg) based on output from ANGSD.
  2. Some parts of the ANGSD code will work for inbreeding estimates version 0.572+.

HWE and Inbreeding estimates

For method details see here And the most recent version of the stand alone program is here https://github.com/fgvieira/ngsF.

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