MsToGlf

For the Korneliussen2013 paper, we simulated data according to genotypes simulated from ms/msms output. For this we used the msToGlf program found in the 'misc/' subfolder of the angsd tar ball.

Sorry about the total lack of information for this program.

Brief Overview

 ./msToGlf 
Probs with args, supply -in -out
also -err -depth -depthFile -singleOut -regLen -nind

-in ms/msms outputfilename

-out prefix outputfilename