ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Plink: Difference between revisions
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From version 0.549 we now support plink output files. Currently we only support the transposed '''.tfam/.tped''' files. But we are working on a native '''.bed/.bim/.fam''' dumper. | From version 0.549 we now support plink output files. Currently we only support the transposed '''.tfam/.tped''' files. But we are working on a native '''.bed/.bim/.fam''' dumper. | ||
This method is essentially a wrapper around the existing genotype caller, and all options for the genotype caller can therefore be used for the plink formated output file. | |||
Revision as of 19:42, 12 September 2013
From version 0.549 we now support plink output files. Currently we only support the transposed .tfam/.tped files. But we are working on a native .bed/.bim/.fam dumper.
This method is essentially a wrapper around the existing genotype caller, and all options for the genotype caller can therefore be used for the plink formated output file.