ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Safv3

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Revision as of 10:27, 7 May 2015 by Thorfinn (talk | contribs) (Created page with "We decided to update the native simple binary double format to a much more intelligent format that allows for random access. The format is described in doc/formats.pdf. This ...")
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We decided to update the native simple binary double format to a much more intelligent format that allows for random access. The format is described in doc/formats.pdf.

This page will contain the impact of this new format in downstream analysis.


One population analysis

#old master
angsd version: 0.801-27-ga699b44 (htslib: 1.2.1-62-g35746af) build(May  5 2015 03:38:17)
#new new saf
angsd version: 0.801-54-gcf1a12d-dirty (htslib: 1.2.1-62-g35746af) build(May  6 2015 23:34:27)

../master/misc/realSFS oldceu.saf 36 -nSites 213376207 -P 20 >oldceu.saf.ml
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