ANGSD: Analysis of next generation Sequencing Data

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SnpFilters

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Revision as of 17:07, 27 March 2015 by Thorfinn (talk | contribs) (Created page with "Angsd has different snpfilters. ;* SB1 strand bias1 ;* SB2 strand bias2 ;* SB3 strand bias3 ;* deviation from HWE ;* Wilcox rank sum test for position in read The 3 stran...")
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Angsd has different snpfilters.


  • SB1 strand bias1
  • SB2 strand bias2
  • SB3 strand bias3
  • deviation from HWE
  • Wilcox rank sum test for position in read


The 3 strand bias filters are described here: http://www.biomedcentral.com/1471-2164/13/666 The deviation from HWE is described in http://www.ncbi.nlm.nih.gov/pubmed/23950147

The wilcox rank sum test is not described anywhere

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