ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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22 September 2012
- 20:4320:43, 22 September 2012 diff hist +1 Installation →Unix
- 20:4220:42, 22 September 2012 diff hist +2 Installation →Download
- 20:4220:42, 22 September 2012 diff hist +86 Installation →Download
- 20:3920:39, 22 September 2012 diff hist +45 ANGSD No edit summary
2 July 2012
- 11:3711:37, 2 July 2012 diff hist +559 Genotype Likelihoods →soapSNP
29 June 2012
- 15:3715:37, 29 June 2012 diff hist −16 Regionfile No edit summary current
- 15:3615:36, 29 June 2012 diff hist −1 Regionfile No edit summary
- 15:3615:36, 29 June 2012 diff hist +664 N Regionfile Created page with "When your inputfile is bam files, then you can specify region You can specify a specific region using the following 3 ways: <examople> ./angsd -bam bamfiles.list -r chr20: ...."
22 June 2012
- 22:1822:18, 22 June 2012 diff hist +137 N Glf files Created page with "DRAGON ;-doGlf 1; tglf binary 10xdouble per sample ;-doGlf 2; beagle output gz requires -doMajorMinor 1/2 ;-doGlf otehrwise text output"
- 16:0316:03, 22 June 2012 diff hist +3 Genotype Likelihoods →Kim et al.
- 16:0216:02, 22 June 2012 diff hist +22 Genotype Likelihoods →soapSNP
19 June 2012
- 14:0414:04, 19 June 2012 diff hist +587 Filters No edit summary
- 14:0114:01, 19 June 2012 diff hist +900 Filters No edit summary
- 13:5813:58, 19 June 2012 diff hist +428 Filters No edit summary
- 12:4812:48, 19 June 2012 diff hist +114 Filters No edit summary
- 12:4212:42, 19 June 2012 diff hist 0 Filters No edit summary
- 12:4212:42, 19 June 2012 diff hist −9 Filters No edit summary
- 12:4212:42, 19 June 2012 diff hist +2 Filters No edit summary
- 12:4112:41, 19 June 2012 diff hist +342 N Filters Created page with "In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options. 1. ;-minMaf float: only work with sites with..."
- 12:3412:34, 19 June 2012 diff hist +107 SNP Calling No edit summary current