ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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15 November 2012
- 00:4300:43, 15 November 2012 diff hist +145 SFS Estimation →Example
1 November 2012
- 15:4915:49, 1 November 2012 diff hist +128 Bugs No edit summary
- 14:4214:42, 1 November 2012 diff hist +59 Bugs No edit summary
- 14:3914:39, 1 November 2012 diff hist +96 Bugs No edit summary
24 October 2012
- 13:0013:00, 24 October 2012 diff hist +191 Glf files No edit summary current
23 October 2012
- 23:3923:39, 23 October 2012 diff hist +89 ANGSD No edit summary
- 22:0222:02, 23 October 2012 diff hist −135 Bugs No edit summary
- 21:5721:57, 23 October 2012 diff hist +297 Bugs No edit summary
- 21:2621:26, 23 October 2012 diff hist +34 Installation →Download
- 21:1421:14, 23 October 2012 diff hist +2 Quick Start →Examples
- 21:1321:13, 23 October 2012 diff hist +661 N Quick Start Created page with "==Whats on this page== This page will contain som random examples which can be used as a quickstart. ===Examples=== Assuming you have a list of bamfiles in in file: 'list.tx..."
- 21:0321:03, 23 October 2012 diff hist −54 Authors No edit summary
- 21:0021:00, 23 October 2012 diff hist −5 Authors No edit summary
- 21:0021:00, 23 October 2012 diff hist +85 Authors No edit summary
- 20:5820:58, 23 October 2012 diff hist −2 Authors →Disclaimer
- 20:5720:57, 23 October 2012 diff hist +97 Authors →Disclaimer
- 20:5620:56, 23 October 2012 diff hist +33 Authors →Disclaimer
- 20:5320:53, 23 October 2012 diff hist +93 Authors →Disclaimer
- 20:5120:51, 23 October 2012 diff hist +78 Authors No edit summary
- 20:4020:40, 23 October 2012 diff hist +2 Authors No edit summary
- 20:4020:40, 23 October 2012 diff hist +34 Authors No edit summary
- 19:1319:13, 23 October 2012 diff hist +86 Introduction No edit summary current
- 19:1019:10, 23 October 2012 diff hist +1 Authors No edit summary
- 19:0519:05, 23 October 2012 diff hist +80 N Authors Created page with "Thorfinn Korneliussen thorfinn@binf.ku.dk anders gaylordsen albrecht@binf.ku.dk"
- 18:3718:37, 23 October 2012 diff hist +88 Bugs No edit summary
- 09:1509:15, 23 October 2012 diff hist 0 Introduction No edit summary
- 09:1509:15, 23 October 2012 diff hist +1 Introduction No edit summary
- 09:1409:14, 23 October 2012 diff hist +292 Introduction No edit summary
- 09:0809:08, 23 October 2012 diff hist +39 Introduction No edit summary
- 09:0709:07, 23 October 2012 diff hist +2 Introduction No edit summary
- 09:0709:07, 23 October 2012 diff hist +128 Introduction No edit summary
- 09:0509:05, 23 October 2012 diff hist +195 N Introduction Created page with "Assuming you have a list of bamfiles in in file: 'list.txt' and you want the genotype likelihoods for position 12500000 on chromosome 8. <pre> ./angsd -bam list.txt -GL 1 -r ..."
20 October 2012
- 23:4723:47, 20 October 2012 diff hist +101 Installation →Download
- 05:2105:21, 20 October 2012 diff hist +9 Installation →Download
- 05:2005:20, 20 October 2012 diff hist 0 Installation →Download
- 05:1705:17, 20 October 2012 diff hist +185 Installation →Download
- 04:1804:18, 20 October 2012 diff hist +118 Bugs No edit summary
18 October 2012
- 04:0404:04, 18 October 2012 diff hist +44 Bugs No edit summary
- 04:0004:00, 18 October 2012 diff hist +38 Bugs No edit summary
- 03:0403:04, 18 October 2012 diff hist +302 Bugs No edit summary
17 October 2012
- 23:4123:41, 17 October 2012 diff hist +62 SFS Estimation →Example
- 23:3923:39, 17 October 2012 diff hist −13 Error estimation →Error estimation from polymorphic sites
- 23:3823:38, 17 October 2012 diff hist +107 Change log →Version notes
- 23:3523:35, 17 October 2012 diff hist +1 Installation →Unix
- 23:3523:35, 17 October 2012 diff hist +1 Installation →Download
- 23:3423:34, 17 October 2012 diff hist +1 ANGSD No edit summary
- 22:0422:04, 17 October 2012 diff hist −161 ANGSD →About
- 22:0122:01, 17 October 2012 diff hist −1 ANGSD →About
- 22:0122:01, 17 October 2012 diff hist +389 ANGSD →About
16 October 2012
- 17:5017:50, 16 October 2012 diff hist +1 Bugs No edit summary
- 17:5017:50, 16 October 2012 diff hist +83 Bugs No edit summary
15 October 2012
- 12:1212:12, 15 October 2012 diff hist +9 Input →optional arguments
14 October 2012
- 02:0402:04, 14 October 2012 diff hist +54 N Bugs Created page with "1. check numSites==0 in all generals: derived classes."
12 October 2012
- 00:2300:23, 12 October 2012 diff hist +1,031 Depth →Output
- 00:2100:21, 12 October 2012 diff hist +4 Depth →Example
- 00:2100:21, 12 October 2012 diff hist +202 Depth →Example
- 00:1800:18, 12 October 2012 diff hist 0 Depth →Output
- 00:1800:18, 12 October 2012 diff hist +152 Depth →Output
- 00:1600:16, 12 October 2012 diff hist +483 Depth →Output
- 00:1500:15, 12 October 2012 diff hist −1,204 Depth →Output
- 00:1300:13, 12 October 2012 diff hist +1,632 Depth →Output
- 00:1200:12, 12 October 2012 diff hist +320 Depth No edit summary
11 October 2012
- 23:2423:24, 11 October 2012 diff hist +13 Error estimation →Error estimation from polymorphic sites
- 23:2123:21, 11 October 2012 diff hist +167 Error estimation →Output
- 23:1523:15, 11 October 2012 diff hist +95 Error estimation →options
- 23:1423:14, 11 October 2012 diff hist +164 Error estimation →Output
- 23:0923:09, 11 October 2012 diff hist +1,032 Error estimation →options
- 22:3522:35, 11 October 2012 diff hist +240 Error estimation →Error estimation from polymorphic sites
- 22:3222:32, 11 October 2012 diff hist +272 Error estimation →Error estimation from polymorphic sites
- 22:2822:28, 11 October 2012 diff hist 0 Citing angsd →Maf estimation from counts of alleles
- 22:2722:27, 11 October 2012 diff hist +62 Citing angsd →Methods
- 15:0415:04, 11 October 2012 diff hist +52 Major Minor →From genotype likelihood data
- 15:0415:04, 11 October 2012 diff hist −5 Major Minor →From genotype likelihood data
10 October 2012
- 18:3718:37, 10 October 2012 diff hist +43 SFS Estimation No edit summary
- 18:3418:34, 10 October 2012 diff hist +11 SFS Estimation No edit summary
- 18:3218:32, 10 October 2012 diff hist +39 SFS Estimation No edit summary
- 18:3118:31, 10 October 2012 diff hist +4 SFS Estimation →Example
- 18:3018:30, 10 October 2012 diff hist +202 SFS Estimation No edit summary
- 18:2418:24, 10 October 2012 diff hist 0 Citing angsd No edit summary
- 18:2318:23, 10 October 2012 diff hist +4 SFS Estimation →Example
- 18:2318:23, 10 October 2012 diff hist +252 SFS Estimation →Example
- 18:2118:21, 10 October 2012 diff hist +148 SFS Estimation No edit summary
- 18:1718:17, 10 October 2012 diff hist +570 SFS Estimation No edit summary
- 15:2615:26, 10 October 2012 diff hist +4 SFS Estimation No edit summary
- 15:2315:23, 10 October 2012 diff hist +24 SFS Estimation →realSFS
- 15:1815:18, 10 October 2012 diff hist +95 SFS Estimation →realSFS
- 15:0815:08, 10 October 2012 diff hist +14 SFS Estimation →realSFS
- 15:0715:07, 10 October 2012 diff hist −1,036 SFS Estimation No edit summary
- 14:2314:23, 10 October 2012 diff hist +98 SFS Estimation No edit summary
- 14:2214:22, 10 October 2012 diff hist −6 Beagle input No edit summary
- 14:2214:22, 10 October 2012 diff hist +23 Beagle input No edit summary
- 14:1414:14, 10 October 2012 diff hist +77 Citing angsd →Methods
- 14:1314:13, 10 October 2012 diff hist +84 Nielsen2012 No edit summary
- 14:1214:12, 10 October 2012 diff hist +85 Nielsen2012 No edit summary
- 14:1114:11, 10 October 2012 diff hist +105 N Nielsen2012 Created page with "SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data"
- 14:0614:06, 10 October 2012 diff hist 0 Genotype Likelihoods →Genotype likelihoods from alignments
- 14:0614:06, 10 October 2012 diff hist −1 Genotype Likelihoods →Genotype likelihoods from alignments
- 14:0314:03, 10 October 2012 diff hist +1 Installation →Unix
- 14:0214:02, 10 October 2012 diff hist 0 Installation →Download
- 14:0214:02, 10 October 2012 diff hist −2 ANGSD No edit summary