ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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7 December 2013
- 17:2017:20, 7 December 2013 diff hist −32 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:1917:19, 7 December 2013 diff hist +119 Genotype Likelihoods No edit summary
- 17:1417:14, 7 December 2013 diff hist +563 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:1117:11, 7 December 2013 diff hist +1 Genotype Likelihoods No edit summary
- 17:0917:09, 7 December 2013 diff hist −13 Genotype Likelihoods No edit summary
- 17:0717:07, 7 December 2013 diff hist −6 Genotype Likelihoods No edit summary
- 17:0517:05, 7 December 2013 diff hist +20 Genotype Likelihoods No edit summary
- 17:0417:04, 7 December 2013 diff hist +34 N Genotype likelihoods from alignments Thorfinn moved page Genotype likelihoods from alignments to Genotype likelihoods current
- 17:0417:04, 7 December 2013 diff hist 0 m Genotype Likelihoods Thorfinn moved page Genotype likelihoods from alignments to Genotype likelihoods
- 17:0417:04, 7 December 2013 diff hist +31 Genotype Likelihoods No edit summary
- 16:5716:57, 7 December 2013 diff hist +1 Genotype Likelihoods No edit summary
- 16:5716:57, 7 December 2013 diff hist +7 Genotype Likelihoods No edit summary
- 16:5616:56, 7 December 2013 diff hist +55 Genotype Likelihoods No edit summary
- 16:4416:44, 7 December 2013 diff hist +124 Genotype Likelihoods No edit summary
- 16:3616:36, 7 December 2013 diff hist +1,277 Error estimation →Output
- 16:3416:34, 7 December 2013 diff hist +63 Error estimation No edit summary
- 16:3216:32, 7 December 2013 diff hist 0 N File:ErrorEstOverall.png No edit summary current
- 16:3216:32, 7 December 2013 diff hist 0 N File:ErrorEst.png No edit summary current
- 16:2916:29, 7 December 2013 diff hist +226 Error estimation →Example
- 16:1816:18, 7 December 2013 diff hist +74 Error estimation →Output
- 16:1716:17, 7 December 2013 diff hist +1 Error estimation →Output
- 16:1716:17, 7 December 2013 diff hist +1 Error estimation →Output
- 16:1716:17, 7 December 2013 diff hist +81 Error estimation →Output
- 15:5815:58, 7 December 2013 diff hist 0 Error estimation →Options
- 15:5815:58, 7 December 2013 diff hist 0 Error estimation →Brief Overview
- 15:2015:20, 7 December 2013 diff hist +66 Error estimation →Theory
- 15:1815:18, 7 December 2013 diff hist +2 Error estimation →Options
- 15:1515:15, 7 December 2013 diff hist +3 Error estimation →Output
- 15:1515:15, 7 December 2013 diff hist +60 Error estimation →Output
- 15:1415:14, 7 December 2013 diff hist 0 Error estimation →example
- 15:1315:13, 7 December 2013 diff hist +37 Error estimation →Options
- 15:1215:12, 7 December 2013 diff hist −8 Error estimation →additional options
- 15:1115:11, 7 December 2013 diff hist +2 Error estimation →Brief Overview
- 15:1115:11, 7 December 2013 diff hist +10 Error estimation →Brief Overview
- 15:1015:10, 7 December 2013 diff hist +233 Error estimation →Brief Overview
- 15:0715:07, 7 December 2013 diff hist +162 Error estimation →Brief Overview
- 14:5814:58, 7 December 2013 diff hist +103 Error estimation →Brief Overview
- 14:4214:42, 7 December 2013 diff hist +6 Error estimation →Brief Overview
- 14:4214:42, 7 December 2013 diff hist +110 Error estimation →Brief Overview
- 14:1514:15, 7 December 2013 diff hist +251 Error estimation →Brief Overview
- 13:5713:57, 7 December 2013 diff hist +14 Error estimation →Error estimation using an outgroup and an error free individual
- 13:5413:54, 7 December 2013 diff hist +2 Error estimation →Options
- 13:5413:54, 7 December 2013 diff hist 0 Error estimation →options
- 13:5213:52, 7 December 2013 diff hist +100 Error estimation →Output
- 13:5113:51, 7 December 2013 diff hist +16 Error estimation No edit summary
6 December 2013
- 15:3215:32, 6 December 2013 diff hist 0 Abbababa →output
- 14:5414:54, 6 December 2013 diff hist −2 Error estimation →Output
- 14:5314:53, 6 December 2013 diff hist +69 Error estimation →Output
- 14:4914:49, 6 December 2013 diff hist 0 File:Error2.png Thorfinn uploaded a new version of "File:Error2.png" current
- 14:4814:48, 6 December 2013 diff hist 0 File:Error1.png Thorfinn uploaded a new version of "File:Error1.png" current
- 14:4514:45, 6 December 2013 diff hist 0 File:Error1.png Thorfinn uploaded a new version of "File:Error1.png"
- 14:4014:40, 6 December 2013 diff hist −52 Error estimation →Output
- 14:4014:40, 6 December 2013 diff hist +53 Error estimation →Output
- 14:3714:37, 6 December 2013 diff hist +26 Error estimation →Output
- 14:3614:36, 6 December 2013 diff hist +26 Error estimation →Output
- 14:3514:35, 6 December 2013 diff hist 0 N File:Error2.png No edit summary
- 14:3514:35, 6 December 2013 diff hist 0 File:Error1.png Thorfinn uploaded a new version of "File:Error1.png"
- 14:3314:33, 6 December 2013 diff hist 0 N File:Error1.png No edit summary
- 14:2714:27, 6 December 2013 diff hist 0 N File:Error1.pdf No edit summary current
- 14:2114:21, 6 December 2013 diff hist +299 Error estimation →Output
- 13:5513:55, 6 December 2013 diff hist −20 Error estimation →extra options
- 13:5213:52, 6 December 2013 diff hist −4 Error estimation →Brief Overview
- 13:5013:50, 6 December 2013 diff hist +574 Error estimation →Error estimation from polymorphic sites
- 13:4013:40, 6 December 2013 diff hist +157 Error estimation No edit summary
- 11:5511:55, 6 December 2013 diff hist +1,470 Error estimation →Method 2
- 11:5411:54, 6 December 2013 diff hist +35 Error estimation →Output
- 11:5411:54, 6 December 2013 diff hist 0 Error estimation →output
- 11:5411:54, 6 December 2013 diff hist +10 Error estimation No edit summary
- 11:5211:52, 6 December 2013 diff hist +69 Error estimation No edit summary
- 11:3311:33, 6 December 2013 diff hist −1 Error estimation →output
- 10:5810:58, 6 December 2013 diff hist +203 Error estimation No edit summary
- 02:5702:57, 6 December 2013 diff hist +20 User:Thorfinn No edit summary
5 December 2013
- 20:2920:29, 5 December 2013 diff hist +38 User:Thorfinn No edit summary
- 19:0519:05, 5 December 2013 diff hist +12 User:Thorfinn No edit summary
- 19:0519:05, 5 December 2013 diff hist +916 N User:Thorfinn Created page with "Thorfinns angsd todolist 1) write error estimation on wiki, need more info 2) Rscript ../../angsd0.565/R/estError.R Loading required package: remix Loading required package..."
- 18:4318:43, 5 December 2013 diff hist +76 Error estimation No edit summary
4 December 2013
- 20:0320:03, 4 December 2013 diff hist −18 Angsd structure No edit summary current
- 19:5519:55, 4 December 2013 diff hist +517 Angsd structure →Analysis
- 19:5419:54, 4 December 2013 diff hist +13 Angsd structure →Input formats
- 19:5219:52, 4 December 2013 diff hist +2 Angsd structure →Input formats
- 19:5219:52, 4 December 2013 diff hist +654 Angsd structure →Input formats
- 19:3619:36, 4 December 2013 diff hist +18 Angsd structure No edit summary
- 19:3619:36, 4 December 2013 diff hist +75 Angsd structure No edit summary
- 19:3519:35, 4 December 2013 diff hist +129 Angsd structure No edit summary
- 19:3519:35, 4 December 2013 diff hist +125 Angsd structure No edit summary
- 19:3319:33, 4 December 2013 diff hist −1,005 Angsd structure →History
- 19:3119:31, 4 December 2013 diff hist +1,227 N Angsd structure Created page with " ==History== 1) A simple program to estimate the MAF based on files containing the counts of allleles (-doPhat). Used in (yu li 2009) 2) An implementation of (suyeon kim 20..."
- 19:2819:28, 4 December 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 19:2819:28, 4 December 2013 diff hist −1 MediaWiki:Sidebar No edit summary
- 19:2619:26, 4 December 2013 diff hist +36 MediaWiki:Sidebar No edit summary
- 19:1319:13, 4 December 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 18:3118:31, 4 December 2013 diff hist 0 Installation No edit summary
- 18:3018:30, 4 December 2013 diff hist 0 ANGSD No edit summary
- 18:2518:25, 4 December 2013 diff hist +8 Abbababa No edit summary
- 18:2518:25, 4 December 2013 diff hist +83 Abbababa No edit summary
- 18:0218:02, 4 December 2013 diff hist +62 Genotype Likelihoods →example
- 17:5817:58, 4 December 2013 diff hist +7 Genotype Likelihoods →example
- 17:5317:53, 4 December 2013 diff hist −2 Genotype Likelihoods →binary
- 17:3217:32, 4 December 2013 diff hist 0 Genotype Likelihoods →output genotype likelihoods
- 15:4915:49, 4 December 2013 diff hist +225 Change log →ANGSD
3 December 2013
- 15:2215:22, 3 December 2013 diff hist −27 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2514:25, 3 December 2013 diff hist −16 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2514:25, 3 December 2013 diff hist −1 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2314:23, 3 December 2013 diff hist +1 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2314:23, 3 December 2013 diff hist +17 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2314:23, 3 December 2013 diff hist −4 Genotype Likelihoods →SAMtools genotype likelihoods
- 02:1502:15, 3 December 2013 diff hist +97 Bugs →small changes that would be nice
2 December 2013
- 20:1020:10, 2 December 2013 diff hist +2 Genotype Likelihoods →SAMtools genotype likelihoods
- 20:0920:09, 2 December 2013 diff hist +6 Genotype Likelihoods →SAMtools genotype likelihoods
- 20:0920:09, 2 December 2013 diff hist +95 Genotype Likelihoods →SAMtools genotype likelihoods
- 20:0220:02, 2 December 2013 diff hist −13 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:5618:56, 2 December 2013 diff hist +65 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:5118:51, 2 December 2013 diff hist +9 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4918:49, 2 December 2013 diff hist +7 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4818:48, 2 December 2013 diff hist +1 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4818:48, 2 December 2013 diff hist +13 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4718:47, 2 December 2013 diff hist +2 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4718:47, 2 December 2013 diff hist +32 Genotype Likelihoods →SAMtools genotype likelihoods
- 16:2716:27, 2 December 2013 diff hist +1 MediaWiki:Sidebar No edit summary
- 15:2315:23, 2 December 2013 diff hist +111 MediaWiki:Sitenotice No edit summary
- 15:2115:21, 2 December 2013 diff hist +13 Fasta No edit summary
- 15:2015:20, 2 December 2013 diff hist +12 Fasta No edit summary
- 14:4814:48, 2 December 2013 diff hist +197 Change log →ANGSD
1 December 2013
30 November 2013
- 18:2518:25, 30 November 2013 diff hist +1 Bugs No edit summary
- 18:2418:24, 30 November 2013 diff hist −2 Bugs No edit summary
- 18:2418:24, 30 November 2013 diff hist +59 Bugs No edit summary
29 November 2013
- 20:3120:31, 29 November 2013 diff hist +25 N Inferring Major and Minor alleles Thorfinn moved page Inferring Major and Minor alleles to Major Minor current
- 20:3120:31, 29 November 2013 diff hist 0 m Major Minor Thorfinn moved page Inferring Major and Minor alleles to Major Minor
- 20:2720:27, 29 November 2013 diff hist +3 MediaWiki:Sidebar No edit summary
- 20:2720:27, 29 November 2013 diff hist −8 MediaWiki:Sidebar No edit summary
- 20:1420:14, 29 November 2013 diff hist +8 MediaWiki:Sidebar No edit summary
- 20:1320:13, 29 November 2013 diff hist +16 MediaWiki:Sidebar Undo revision 1201 by Thorfinn (talk)
- 20:1220:12, 29 November 2013 diff hist −16 MediaWiki:Sidebar No edit summary
- 20:1120:11, 29 November 2013 diff hist +12 MediaWiki:Sidebar No edit summary
- 16:5016:50, 29 November 2013 diff hist +2 Allele Counts →Example
- 16:5016:50, 29 November 2013 diff hist +130 Allele Counts →Printing Counts per site
- 16:4916:49, 29 November 2013 diff hist −130 Allele Counts →Example
- 16:4816:48, 29 November 2013 diff hist +2 Allele Counts →qscore Distribution
- 16:4816:48, 29 November 2013 diff hist +2 Allele Counts →Depth Distribution
- 16:4716:47, 29 November 2013 diff hist −2 Allele Counts →qscore Distribution
- 16:4716:47, 29 November 2013 diff hist +2 Allele Counts →qscore Distribution
- 16:4716:47, 29 November 2013 diff hist +1 Allele Counts →Output formats
- 16:4616:46, 29 November 2013 diff hist +1,059 Allele Counts →Depth Distribution
- 16:4016:40, 29 November 2013 diff hist +138 Allele Counts →File dumping
- 16:3916:39, 29 November 2013 diff hist +72 Allele Counts →qscore Distribution
- 16:3816:38, 29 November 2013 diff hist +367 Allele Counts →qscore Distribution
- 16:3716:37, 29 November 2013 diff hist +62 Allele Counts →Printing Counts per site
- 16:3616:36, 29 November 2013 diff hist +90 Allele Counts No edit summary
- 16:3516:35, 29 November 2013 diff hist −130 Allele Counts →requred
- 16:3016:30, 29 November 2013 diff hist +110 Allele Counts →Printing Counts per site
- 16:2816:28, 29 November 2013 diff hist −42 Allele Counts →Printing Counts per site
- 16:2716:27, 29 November 2013 diff hist +4 Allele Counts →Printing Counts per site
- 16:2616:26, 29 November 2013 diff hist +516 Allele Counts →Printing Counts per site
- 16:2316:23, 29 November 2013 diff hist +1 Allele Counts →Printing Counts per site
- 16:2216:22, 29 November 2013 diff hist +9 Allele Counts →printing counts
- 16:2216:22, 29 November 2013 diff hist −4 Allele Counts →printing counts
- 16:2116:21, 29 November 2013 diff hist +60 Allele Counts →File dumping
- 16:2016:20, 29 November 2013 diff hist +61 Allele Counts →Filtering
- 16:1416:14, 29 November 2013 diff hist +214 Allele Counts →Filtering
- 16:1216:12, 29 November 2013 diff hist 0 Allele Counts No edit summary
- 16:1116:11, 29 November 2013 diff hist +63 Allele Counts →Filtering
- 16:1116:11, 29 November 2013 diff hist +89 Allele Counts →Options
- 16:0916:09, 29 November 2013 diff hist +27 N Alleles counts Thorfinn moved page Alleles counts to Allele Counts current
- 16:0916:09, 29 November 2013 diff hist 0 m Allele Counts Thorfinn moved page Alleles counts to Allele Counts
- 16:0616:06, 29 November 2013 diff hist +1 Allele Counts →Options
- 16:0416:04, 29 November 2013 diff hist +156 Allele Counts No edit summary
- 16:0216:02, 29 November 2013 diff hist +253 Allele Counts No edit summary
- 16:0016:00, 29 November 2013 diff hist −81 Allele Counts No edit summary
- 15:5815:58, 29 November 2013 diff hist +78 Allele Counts Undo revision 1164 by Thorfinn (talk)
- 15:5815:58, 29 November 2013 diff hist −78 Allele Counts No edit summary
- 15:5515:55, 29 November 2013 diff hist +75 Allele Counts No edit summary
- 15:5415:54, 29 November 2013 diff hist +8 Allele Counts No edit summary
- 15:4915:49, 29 November 2013 diff hist −109 Allele Counts →Allele counts
- 15:4915:49, 29 November 2013 diff hist −4 Allele Counts →Brief Overview
- 15:4615:46, 29 November 2013 diff hist +193 Allele Counts →Brief Overview
- 15:0915:09, 29 November 2013 diff hist 0 Allele Counts →Brief Overview
- 15:0915:09, 29 November 2013 diff hist +821 Allele Counts →Allele counts
- 15:0615:06, 29 November 2013 diff hist +1 Allele Counts No edit summary
- 15:0615:06, 29 November 2013 diff hist 0 Allele Counts No edit summary
- 15:0615:06, 29 November 2013 diff hist +200 Allele Counts No edit summary
- 15:0315:03, 29 November 2013 diff hist +4 ANGSD →Analysis from genotype probabilities
- 15:0315:03, 29 November 2013 diff hist −1 ANGSD No edit summary
28 November 2013
- 18:5118:51, 28 November 2013 diff hist 0 Fasta No edit summary
- 18:5018:50, 28 November 2013 diff hist 0 Fasta No edit summary
- 18:4818:48, 28 November 2013 diff hist +91 Fasta No edit summary
- 18:3818:38, 28 November 2013 diff hist +1 Fasta →Brief Overview
- 18:3818:38, 28 November 2013 diff hist +132 Fasta →Brief Overview
- 18:3618:36, 28 November 2013 diff hist +38 Fasta →Brief Overview
- 18:3518:35, 28 November 2013 diff hist +4 Fasta →Brief Overview
- 18:3418:34, 28 November 2013 diff hist +1 Fasta →Brief Overview
- 18:3318:33, 28 November 2013 diff hist +39 Fasta →Brief Overview
- 18:2618:26, 28 November 2013 diff hist +127 Fasta →Brief Overview
- 18:2218:22, 28 November 2013 diff hist +53 Fasta →Brief Overview
- 14:4514:45, 28 November 2013 diff hist +3 Fasta No edit summary
- 13:2613:26, 28 November 2013 diff hist +209 Fasta →Brief Overview
- 12:3812:38, 28 November 2013 diff hist +60 Fasta →Brief Overview
- 12:3712:37, 28 November 2013 diff hist +358 Fasta →Options
27 November 2013
- 20:4220:42, 27 November 2013 diff hist +3 Fasta No edit summary
- 20:4220:42, 27 November 2013 diff hist 0 Fasta No edit summary
- 20:4120:41, 27 November 2013 diff hist +2 Fasta →Options
- 20:4120:41, 27 November 2013 diff hist 0 Fasta No edit summary
- 20:4020:40, 27 November 2013 diff hist +1 Fasta →Example
- 20:3920:39, 27 November 2013 diff hist +1 Fasta No edit summary
- 20:3920:39, 27 November 2013 diff hist 0 Fasta No edit summary
26 November 2013
- 15:1915:19, 26 November 2013 diff hist +48 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:4714:47, 26 November 2013 diff hist +63 Genotype Likelihoods →SAMtools genotype likelihoods
- 12:5012:50, 26 November 2013 diff hist +2 Genotype Likelihoods →GATK genotype likelihoods
25 November 2013
- 20:0620:06, 25 November 2013 diff hist +58 Citing angsd →Admixture
- 20:0520:05, 25 November 2013 diff hist +28 NGSadmix No edit summary
- 20:0520:05, 25 November 2013 diff hist +17 Citing angsd →Neutrality tests (eg Tajima)
- 19:4819:48, 25 November 2013 diff hist +2 Genotype Likelihoods →SOAPsnp genotype likelihoods
- 19:4819:48, 25 November 2013 diff hist +6 Genotype Likelihoods →GATK genotype likelihoods
- 19:4719:47, 25 November 2013 diff hist +94 Genotype Likelihoods →GATK genotype likelihoods
- 19:4219:42, 25 November 2013 diff hist 0 Genotype Likelihoods →GATK genotype likelihoods
- 19:4219:42, 25 November 2013 diff hist +182 Genotype Likelihoods →GATK genotype likelihoods
- 19:3819:38, 25 November 2013 diff hist 0 Genotype Likelihoods →GATK genotype likelihoods
- 19:3819:38, 25 November 2013 diff hist 0 Genotype Likelihoods →GATK genotype likelihoods
- 19:3819:38, 25 November 2013 diff hist +8 Genotype Likelihoods →GATK genotype likelihoods
- 19:3719:37, 25 November 2013 diff hist +8 Genotype Likelihoods →GATK genotype likelihoods
- 19:3619:36, 25 November 2013 diff hist +15 Genotype Likelihoods →GATK genotype likelihoods
- 19:3619:36, 25 November 2013 diff hist +91 Genotype Likelihoods →GATK genotype likelihoods
- 19:3519:35, 25 November 2013 diff hist +27 Genotype Likelihoods →GATK genotype likelihoods
- 19:3419:34, 25 November 2013 diff hist +10 Genotype Likelihoods →GATK genotype likelihoods
- 19:3419:34, 25 November 2013 diff hist −10 Genotype Likelihoods →GATK genotype likelihoods
- 19:3319:33, 25 November 2013 diff hist +12 Genotype Likelihoods →GATK genotype likelihoods
- 19:3319:33, 25 November 2013 diff hist −20 Genotype Likelihoods →GATK genotype likelihoods
- 19:3319:33, 25 November 2013 diff hist −2 Genotype Likelihoods →GATK genotype likelihoods
- 19:3219:32, 25 November 2013 diff hist +10 Genotype Likelihoods →GATK genotype likelihoods
- 19:3219:32, 25 November 2013 diff hist −3 Genotype Likelihoods →GATK genotype likelihoods
- 19:3219:32, 25 November 2013 diff hist −5 Genotype Likelihoods →GATK genotype likelihoods
- 19:3119:31, 25 November 2013 diff hist +54 Genotype Likelihoods →GATK genotype likelihoods
- 19:2719:27, 25 November 2013 diff hist +1 Genotype Likelihoods →GATK genotype likelihoods
- 19:2619:26, 25 November 2013 diff hist +14 Genotype Likelihoods →GATK genotype likelihoods
- 19:2519:25, 25 November 2013 diff hist +27 Genotype Likelihoods →GATK genotype likelihoods
- 19:2319:23, 25 November 2013 diff hist −13 Genotype Likelihoods →Theory
- 19:2319:23, 25 November 2013 diff hist +6 Genotype Likelihoods →Theory
- 19:2319:23, 25 November 2013 diff hist +2 Genotype Likelihoods →Theory
- 19:2219:22, 25 November 2013 diff hist +4 Genotype Likelihoods →Theory
- 19:2219:22, 25 November 2013 diff hist −1 Genotype Likelihoods →Theory
- 19:2219:22, 25 November 2013 diff hist +74 Genotype Likelihoods →Theory
- 19:2019:20, 25 November 2013 diff hist +15 Genotype Likelihoods →GATK genotype likelihoods
- 19:1819:18, 25 November 2013 diff hist +13 Genotype Likelihoods →GATK genotype likelihoods
- 19:1719:17, 25 November 2013 diff hist +136 Genotype Likelihoods →Theory
- 19:0919:09, 25 November 2013 diff hist +67 Genotype Likelihoods →Theory
- 19:0819:08, 25 November 2013 diff hist +27 Genotype Likelihoods →Theory
- 19:0719:07, 25 November 2013 diff hist +6 Genotype Likelihoods →Theory
- 19:0719:07, 25 November 2013 diff hist −30 Genotype Likelihoods →Theory
- 19:0619:06, 25 November 2013 diff hist +508 Genotype Likelihoods →Theory
- 18:5318:53, 25 November 2013 diff hist +10 Genotype Likelihoods →simple text format
- 13:5713:57, 25 November 2013 diff hist +36 Bugs →New stuff
24 November 2013
- 19:3119:31, 24 November 2013 diff hist +1 MediaWiki:Sitenotice No edit summary
- 19:2619:26, 24 November 2013 diff hist 0 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 00:4800:48, 24 November 2013 diff hist −42 Bugs →small changes that would be nice
- 00:4800:48, 24 November 2013 diff hist −261 Bugs →small changes that would be nice
23 November 2013
- 23:0923:09, 23 November 2013 diff hist −4 MediaWiki:Sitenotice No edit summary
- 23:0923:09, 23 November 2013 diff hist −5 MediaWiki:Sitenotice No edit summary
- 23:0823:08, 23 November 2013 diff hist +5 MediaWiki:Sitenotice No edit summary
- 23:0723:07, 23 November 2013 diff hist −2 MediaWiki:Sitenotice No edit summary
- 23:0623:06, 23 November 2013 diff hist −2 MediaWiki:Sitenotice No edit summary
- 23:0623:06, 23 November 2013 diff hist −15 MediaWiki:Sitenotice No edit summary
- 23:0523:05, 23 November 2013 diff hist +3 MediaWiki:Sitenotice No edit summary
- 23:0523:05, 23 November 2013 diff hist −2 MediaWiki:Sitenotice No edit summary
- 23:0423:04, 23 November 2013 diff hist +2 MediaWiki:Sitenotice No edit summary
- 23:0423:04, 23 November 2013 diff hist +2 MediaWiki:Sitenotice No edit summary
- 23:0423:04, 23 November 2013 diff hist +2 MediaWiki:Sitenotice No edit summary
- 23:0423:04, 23 November 2013 diff hist +165 MediaWiki:Sitenotice No edit summary
- 23:0123:01, 23 November 2013 diff hist +13 MediaWiki:Sitenotice No edit summary
- 22:5622:56, 23 November 2013 diff hist +15 Major Minor →From genotype likelihood data
- 22:5522:55, 23 November 2013 diff hist +1,214 Major Minor →Theory
- 22:5522:55, 23 November 2013 diff hist +10 Major Minor →From genotype probability data
- 22:5222:52, 23 November 2013 diff hist −11 MediaWiki:SiteNotice Blanked the page current
- 22:5222:52, 23 November 2013 diff hist +11 N MediaWiki:SiteNotice Created page with "asdfadfasdf"
- 21:5521:55, 23 November 2013 diff hist −1 Fst PCA →Fst
- 19:1219:12, 23 November 2013 diff hist 0 Installation →Unix
- 14:5714:57, 23 November 2013 diff hist +30 SFS Estimation →Theory
- 14:5614:56, 23 November 2013 diff hist −88 SFS Estimation No edit summary
22 November 2013
- 18:2418:24, 22 November 2013 diff hist −7 Change log →ANGSD
- 18:2418:24, 22 November 2013 diff hist +7 Change log →ANGSD
- 18:0118:01, 22 November 2013 diff hist 0 Installation No edit summary
- 18:0118:01, 22 November 2013 diff hist −88 ANGSD No edit summary
- 17:5517:55, 22 November 2013 diff hist +261 Change log →ANGSD
- 07:0407:04, 22 November 2013 diff hist +88 ANGSD No edit summary
- 06:5606:56, 22 November 2013 diff hist +88 SFS Estimation No edit summary
21 November 2013
- 14:2114:21, 21 November 2013 diff hist +146 RealSFS →Brief overview
- 14:1914:19, 21 November 2013 diff hist +1 SFS Estimation →Likelihood of the SFS
- 14:1914:19, 21 November 2013 diff hist −1 SFS Estimation →Likelihood of the SFS
- 14:1914:19, 21 November 2013 diff hist +14 SFS Estimation →Likelihood of the SFS
- 14:1814:18, 21 November 2013 diff hist +3 SFS Estimation →Likelihood of the SFS
- 14:1814:18, 21 November 2013 diff hist +1 SFS Estimation →Sample allele frequency/Multisample GL
- 14:1814:18, 21 November 2013 diff hist +2 SFS Estimation →SFS definition
- 02:3802:38, 21 November 2013 diff hist +160 SFS Estimation →Likelihood of the SFS
- 02:3602:36, 21 November 2013 diff hist +1 SFS Estimation →Likelihood of the SFS
- 02:3602:36, 21 November 2013 diff hist −2 SFS Estimation →Likelihood of the SFS
- 02:3602:36, 21 November 2013 diff hist +2 SFS Estimation →Likelihood of the SFS
- 02:3502:35, 21 November 2013 diff hist +96 SFS Estimation →Likelihood of the SFS
- 02:3402:34, 21 November 2013 diff hist 0 SFS Estimation →Likelihood of the SFS
- 02:3402:34, 21 November 2013 diff hist +3 SFS Estimation →Likelihood of the SFS
- 02:3302:33, 21 November 2013 diff hist +15 SFS Estimation →Likelihood of the SFS
- 02:3302:33, 21 November 2013 diff hist +130 SFS Estimation →Sample allele frequency/Multisample GL
- 02:2402:24, 21 November 2013 diff hist +13 SFS Estimation →Sample allele frequency/Multisample GL
- 02:2302:23, 21 November 2013 diff hist +2 SFS Estimation →Sample allele frequency/Multisample GL
- 02:2302:23, 21 November 2013 diff hist +52 SFS Estimation →Sample allele frequency/Multisample GL
- 02:2102:21, 21 November 2013 diff hist +3 SFS Estimation →Sample allele frequency/Multisample GL
- 02:2102:21, 21 November 2013 diff hist +125 SFS Estimation →Sample allele frequency/Multisample GL
- 02:1702:17, 21 November 2013 diff hist +130 SFS Estimation →Sample allele frequency/Multisample GL
- 02:1502:15, 21 November 2013 diff hist +214 SFS Estimation →Sample allele frequency/Multisample GL
- 02:1002:10, 21 November 2013 diff hist +42 SFS Estimation →SFS definition
- 02:0702:07, 21 November 2013 diff hist −50 SFS Estimation →SFS definition
- 02:0602:06, 21 November 2013 diff hist +1 SFS Estimation →SFS definition
- 02:0602:06, 21 November 2013 diff hist +75 SFS Estimation →SFS definition
- 02:0502:05, 21 November 2013 diff hist +1 SFS Estimation →Theory
- 02:0202:02, 21 November 2013 diff hist +24 SFS Estimation →Theory
- 00:5000:50, 21 November 2013 diff hist +1 ANGSD No edit summary
- 00:0700:07, 21 November 2013 diff hist −1 SFS Estimation →Theory
- 00:0100:01, 21 November 2013 diff hist +1 SFS Estimation →Theory
20 November 2013
- 23:5923:59, 20 November 2013 diff hist −1 SFS Estimation →Theory
- 22:5622:56, 20 November 2013 diff hist +93 SFS Estimation →Theory
- 14:1214:12, 20 November 2013 diff hist −222 SFS Estimation →Theory
- 13:5613:56, 20 November 2013 diff hist −92 SFS Estimation →Theory
- 13:4713:47, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:4713:47, 20 November 2013 diff hist 0 SFS Estimation →Theory
- 13:4713:47, 20 November 2013 diff hist 0 SFS Estimation →Theory
- 13:4713:47, 20 November 2013 diff hist +111 SFS Estimation →Theory
- 13:4613:46, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:4613:46, 20 November 2013 diff hist −2 SFS Estimation →Theory
- 13:4613:46, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:4513:45, 20 November 2013 diff hist +35 SFS Estimation →Theory
- 13:4313:43, 20 November 2013 diff hist −174 SFS Estimation →Theory
- 13:4313:43, 20 November 2013 diff hist −22 SFS Estimation →Theory
- 13:4213:42, 20 November 2013 diff hist −8 SFS Estimation →Theory
- 13:4213:42, 20 November 2013 diff hist −5 SFS Estimation →Theory
- 13:4213:42, 20 November 2013 diff hist −1 SFS Estimation →Theory
- 13:4213:42, 20 November 2013 diff hist 0 SFS Estimation →Theory
- 13:4213:42, 20 November 2013 diff hist +91 SFS Estimation →Theory
- 13:4113:41, 20 November 2013 diff hist −14 SFS Estimation →Theory
- 13:4113:41, 20 November 2013 diff hist −76 SFS Estimation →Theory
- 13:4113:41, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:4013:40, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:4013:40, 20 November 2013 diff hist −67 SFS Estimation →Theory
- 13:3913:39, 20 November 2013 diff hist +4 SFS Estimation →Theory
- 13:3813:38, 20 November 2013 diff hist +140 SFS Estimation →Theory
- 13:3813:38, 20 November 2013 diff hist +17 SFS Estimation →Theory
- 13:3713:37, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:3713:37, 20 November 2013 diff hist −1 SFS Estimation →Theory
- 13:3613:36, 20 November 2013 diff hist −10 SFS Estimation →Theory
- 13:3613:36, 20 November 2013 diff hist 0 SFS Estimation →Theory
- 13:3613:36, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:3613:36, 20 November 2013 diff hist +4 SFS Estimation →Theory
- 13:3613:36, 20 November 2013 diff hist +4 SFS Estimation →Theory
- 13:3513:35, 20 November 2013 diff hist −11 SFS Estimation →Theory
- 13:3513:35, 20 November 2013 diff hist 0 SFS Estimation →Theory
- 13:3413:34, 20 November 2013 diff hist +474 SFS Estimation →Theory
- 13:2913:29, 20 November 2013 diff hist +1 SFS Estimation →Theory
- 13:2913:29, 20 November 2013 diff hist +209 SFS Estimation →Theory
- 13:1613:16, 20 November 2013 diff hist +162 SFS Estimation →Theory
- 13:1313:13, 20 November 2013 diff hist +44 SFS Estimation →Theory
- 13:1313:13, 20 November 2013 diff hist +285 SFS Estimation →Theory
- 13:0313:03, 20 November 2013 diff hist +9 SFS Estimation →Format specification of binary .sfs file
18 November 2013
- 12:5812:58, 18 November 2013 diff hist +28 Bugs →New stuff
17 November 2013
- 17:5817:58, 17 November 2013 diff hist 0 Installation →Unix
- 17:5717:57, 17 November 2013 diff hist 0 Installation →Download
- 17:5717:57, 17 November 2013 diff hist 0 ANGSD No edit summary
- 17:5217:52, 17 November 2013 diff hist +195 Change log →ANGSD
- 17:4417:44, 17 November 2013 diff hist −8 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 17:4417:44, 17 November 2013 diff hist −8 Thetas,Tajima,Neutrality tests →Example
- 17:4217:42, 17 November 2013 diff hist +197 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 17:4117:41, 17 November 2013 diff hist +411 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 17:4017:40, 17 November 2013 diff hist +149 Thetas,Tajima,Neutrality tests →Example
- 17:3817:38, 17 November 2013 diff hist +356 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 17:3217:32, 17 November 2013 diff hist +40 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 17:3017:30, 17 November 2013 diff hist +225 SFS Estimation →Format specification of binary .sfs file
- 17:2917:29, 17 November 2013 diff hist 0 SFS Estimation No edit summary
- 17:2817:28, 17 November 2013 diff hist +294 SFS Estimation →Folded spectra
- 17:2317:23, 17 November 2013 diff hist +98 SFS Estimation No edit summary
- 17:2217:22, 17 November 2013 diff hist +219 SFS Estimation →Folded spectra
- 17:2117:21, 17 November 2013 diff hist +48 SFS Estimation →Folded spectra
- 17:1717:17, 17 November 2013 diff hist +375 SFS Estimation →Format specification of binary .sfs file
16 November 2013
- 15:0915:09, 16 November 2013 diff hist +276 SFS Estimation →Format specification of binary .sfs file
- 15:0415:04, 16 November 2013 diff hist +477 SFS Estimation →Format specification of binary .sfs file
- 14:5314:53, 16 November 2013 diff hist +147 SFS Estimation →Format specification of binary .sfs file
- 14:5114:51, 16 November 2013 diff hist +6 SFS Estimation →Format specification of outputfile
- 14:5114:51, 16 November 2013 diff hist +38 SFS Estimation No edit summary
10 November 2013
- 10:2410:24, 10 November 2013 diff hist +162 Change log →ANGSD
24 October 2013
- 09:3709:37, 24 October 2013 diff hist +120 Tutorial →Prepare files
- 09:3309:33, 24 October 2013 diff hist +146 Tutorial No edit summary
15 October 2013
10 October 2013
- 18:5418:54, 10 October 2013 diff hist +105 Installation →Install
- 18:0018:00, 10 October 2013 diff hist +161 Installation →Unix
- 17:5817:58, 10 October 2013 diff hist +187 Installation →Download
8 October 2013
- 20:4020:40, 8 October 2013 diff hist −1 Genotype calling No edit summary
- 20:4020:40, 8 October 2013 diff hist +4 Genotype calling No edit summary
- 20:2920:29, 8 October 2013 diff hist 0 Installation →Unix
- 20:2920:29, 8 October 2013 diff hist 0 ANGSD No edit summary
- 11:4711:47, 8 October 2013 diff hist −12 Tutorial →Estimating the SFS
- 11:3611:36, 8 October 2013 diff hist 0 Tutorial →Estimating the SFS
- 11:3511:35, 8 October 2013 diff hist −88 Tutorial →Estimating the SFS
- 11:3511:35, 8 October 2013 diff hist +414 Tutorial →Estimating the SFS
- 01:1401:14, 8 October 2013 diff hist +161 Change log →ANGSD
- 01:1201:12, 8 October 2013 diff hist 0 Installation →Unix
- 01:1201:12, 8 October 2013 diff hist 0 ANGSD No edit summary
7 October 2013
- 15:5915:59, 7 October 2013 diff hist +221 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 15:5315:53, 7 October 2013 diff hist 0 Thetas,Tajima,Neutrality tests →.thetas.gz is
- 15:4815:48, 7 October 2013 diff hist +376 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 15:4415:44, 7 October 2013 diff hist +235 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
- 15:3815:38, 7 October 2013 diff hist −2 Thetas,Tajima,Neutrality tests No edit summary
- 15:3815:38, 7 October 2013 diff hist −2 Thetas,Tajima,Neutrality tests No edit summary
- 15:3715:37, 7 October 2013 diff hist +6 Thetas,Tajima,Neutrality tests No edit summary
- 15:3715:37, 7 October 2013 diff hist +4 Thetas,Tajima,Neutrality tests No edit summary
- 15:3715:37, 7 October 2013 diff hist +264 Thetas,Tajima,Neutrality tests No edit summary
- 15:3415:34, 7 October 2013 diff hist −1,033 Thetas,Tajima,Neutrality tests →.thetas.gz.pestPG
4 October 2013
- 10:0610:06, 4 October 2013 diff hist 0 Thetas,Tajima,Neutrality tests →Example
- 10:0510:05, 4 October 2013 diff hist 0 ANGSD No edit summary
3 October 2013
- 23:0623:06, 3 October 2013 diff hist +167 Change log →ANGSD
- 17:5217:52, 3 October 2013 diff hist +65 Thetas,Tajima,Neutrality tests No edit summary
- 17:4317:43, 3 October 2013 diff hist 0 Installation →Unix
- 17:3917:39, 3 October 2013 diff hist +308 Thetas,Tajima,Neutrality tests No edit summary
- 17:3617:36, 3 October 2013 diff hist −632 Thetas,Tajima,Neutrality tests →Example
- 17:3517:35, 3 October 2013 diff hist +31 SFS Estimation →Example
- 17:3417:34, 3 October 2013 diff hist +88 SFS Estimation →Example
- 17:3317:33, 3 October 2013 diff hist +40 SFS Estimation →Example
- 17:3217:32, 3 October 2013 diff hist −14 SFS Estimation →Example
- 17:3117:31, 3 October 2013 diff hist −9 SFS Estimation →Example
- 17:3117:31, 3 October 2013 diff hist +14 SFS Estimation →Example
- 17:2817:28, 3 October 2013 diff hist +12 SFS Estimation No edit summary
- 17:2717:27, 3 October 2013 diff hist +66 RealSFS No edit summary
- 17:2217:22, 3 October 2013 diff hist +264 RealSFS No edit summary
- 17:1817:18, 3 October 2013 diff hist +111 N RealSFS Created page with "This program will estimate the SFS based on a .sfs file generated from the '''./angsd [options] -doRealSFS '''."
- 17:1717:17, 3 October 2013 diff hist 0 Thetas,Tajima,Neutrality tests →Example
- 17:1517:15, 3 October 2013 diff hist +1 Thetas,Tajima,Neutrality tests →Example
- 17:1517:15, 3 October 2013 diff hist +106 Thetas,Tajima,Neutrality tests →Example
- 17:1317:13, 3 October 2013 diff hist −6 Thetas,Tajima,Neutrality tests No edit summary
- 17:1217:12, 3 October 2013 diff hist +3 Thetas,Tajima,Neutrality tests →Example
- 17:1117:11, 3 October 2013 diff hist +192 Thetas,Tajima,Neutrality tests →Example
- 17:0917:09, 3 October 2013 diff hist 0 Thetas,Tajima,Neutrality tests No edit summary
- 17:0917:09, 3 October 2013 diff hist −78 Thetas,Tajima,Neutrality tests →Example
- 17:0917:09, 3 October 2013 diff hist +288 Thetas,Tajima,Neutrality tests No edit summary
- 17:0217:02, 3 October 2013 diff hist −2 SFS Estimation →Brief Overview
- 17:0117:01, 3 October 2013 diff hist −56 SFS Estimation No edit summary
- 17:0117:01, 3 October 2013 diff hist +1 SFS Estimation No edit summary
- 17:0017:00, 3 October 2013 diff hist +1 SFS Estimation No edit summary
- 17:0017:00, 3 October 2013 diff hist +17 SFS Estimation No edit summary
- 16:5916:59, 3 October 2013 diff hist +352 SFS Estimation No edit summary
- 16:5816:58, 3 October 2013 diff hist −311 SFS Estimation No edit summary
- 16:5516:55, 3 October 2013 diff hist −184 SFS Estimation →Example
- 16:5216:52, 3 October 2013 diff hist +66 SFS Estimation No edit summary
- 15:3315:33, 3 October 2013 diff hist −505 Thetas,Tajima,Neutrality tests No edit summary
- 15:3215:32, 3 October 2013 diff hist −33 Thetas,Tajima,Neutrality tests Undo revision 862 by Thorfinn (talk)
- 15:3115:31, 3 October 2013 diff hist +78 Thetas,Tajima,Neutrality tests No edit summary
- 15:1315:13, 3 October 2013 diff hist +382 Thetas,Tajima,Neutrality tests No edit summary
- 15:0315:03, 3 October 2013 diff hist +70 Korneliussen2013 No edit summary current
- 15:0215:02, 3 October 2013 diff hist +60 Korneliussen2013 No edit summary
- 15:0115:01, 3 October 2013 diff hist +78 Thetas,Tajima,Neutrality tests No edit summary
2 October 2013
- 20:0720:07, 2 October 2013 diff hist +1,888 Korneliussen2013 →Bibtex
- 19:3419:34, 2 October 2013 diff hist +33 Thetas,Tajima,Neutrality tests No edit summary
- 19:3219:32, 2 October 2013 diff hist +262 N Korneliussen2013 Created page with "Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen and Rasmus Nielsen; Calculation of Tajima's D and other neutrality test statistics from low depth next-generation se..."
- 19:2819:28, 2 October 2013 diff hist +57 Citing angsd →SFS estimation
30 September 2013
- 09:1709:17, 30 September 2013 diff hist −10 Base quality →options current
- 09:1609:16, 30 September 2013 diff hist −51 Allele Counts →options
- 09:1509:15, 30 September 2013 diff hist −5 Allele Counts →options
- 09:1409:14, 30 September 2013 diff hist −27 Filters →Number of non missing individuals
26 September 2013
- 11:0511:05, 26 September 2013 diff hist +501 SFS Estimation →NB
12 September 2013
- 20:0620:06, 12 September 2013 diff hist +44 Change log →Version notes
- 20:0520:05, 12 September 2013 diff hist 0 Installation →Unix
- 20:0320:03, 12 September 2013 diff hist 0 ANGSD No edit summary
- 20:0220:02, 12 September 2013 diff hist +15 MediaWiki:Sidebar No edit summary
- 20:0120:01, 12 September 2013 diff hist +102 Plink →Output files
- 20:0020:00, 12 September 2013 diff hist +1,261 Plink →Output files
- 19:5819:58, 12 September 2013 diff hist +317 Plink →Output files
- 19:5719:57, 12 September 2013 diff hist −6 Plink →Output files
- 19:5619:56, 12 September 2013 diff hist +82 Plink →Example
- 19:5419:54, 12 September 2013 diff hist +46 Plink →References
- 19:5419:54, 12 September 2013 diff hist +245 Plink No edit summary
- 19:4919:49, 12 September 2013 diff hist +16 Plink No edit summary
- 19:4819:48, 12 September 2013 diff hist +11 Plink No edit summary
- 19:4819:48, 12 September 2013 diff hist +478 Plink No edit summary
- 19:4419:44, 12 September 2013 diff hist +128 Plink No edit summary
- 19:4219:42, 12 September 2013 diff hist +174 Plink No edit summary
- 19:4119:41, 12 September 2013 diff hist +69 Plink No edit summary
- 19:4019:40, 12 September 2013 diff hist +110 N Plink Created page with "From version 0.549 we now support plink output files. Currently we only support the transposed '.tfam'/'.tped'"
4 September 2013
- 20:0320:03, 4 September 2013 diff hist +297 ANGSD No edit summary
- 20:0020:00, 4 September 2013 diff hist 0 Installation No edit summary
22 July 2013
- 15:4215:42, 22 July 2013 diff hist +51 Thetas,Tajima,Neutrality tests No edit summary
- 15:3615:36, 22 July 2013 diff hist +39 MediaWiki:Sidebar No edit summary
18 July 2013
- 01:4001:40, 18 July 2013 diff hist +82 NGSadmix No edit summary
- 01:2801:28, 18 July 2013 diff hist +3 Sites →Selected Sites
- 01:2701:27, 18 July 2013 diff hist +1 Sites →Selected Sites
- 01:2601:26, 18 July 2013 diff hist +82 Sites →Selected Sites
- 01:2501:25, 18 July 2013 diff hist −5 Sites →Number of non missing individuals
- 01:2501:25, 18 July 2013 diff hist +332 Sites →Selected Sites
- 01:2301:23, 18 July 2013 diff hist −7 Sites →Selected Sites
- 01:2201:22, 18 July 2013 diff hist −782 Sites →Selected Sites
- 01:1601:16, 18 July 2013 diff hist −116 Sites →Main
- 01:1601:16, 18 July 2013 diff hist +1 Filters →Version Notice
- 01:1501:15, 18 July 2013 diff hist +129 Filters No edit summary
- 01:1401:14, 18 July 2013 diff hist +90 Sites No edit summary
- 01:1301:13, 18 July 2013 diff hist +4,297 N Sites Created page with "In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options. NB the afile.keep is still beta and some use..."
- 01:1201:12, 18 July 2013 diff hist +93 ANGSD No edit summary
- 01:0201:02, 18 July 2013 diff hist +205 Installation →Install
16 July 2013
- 17:4917:49, 16 July 2013 diff hist 0 MediaWiki:Sidebar No edit summary