ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Thorfinn
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22 June 2012
- 16:0216:02, 22 June 2012 diff hist +22 Genotype Likelihoods →soapSNP
19 June 2012
- 14:0414:04, 19 June 2012 diff hist +587 Filters No edit summary
- 14:0114:01, 19 June 2012 diff hist +900 Filters No edit summary
- 13:5813:58, 19 June 2012 diff hist +428 Filters No edit summary
- 12:4812:48, 19 June 2012 diff hist +114 Filters No edit summary
- 12:4212:42, 19 June 2012 diff hist 0 Filters No edit summary
- 12:4212:42, 19 June 2012 diff hist −9 Filters No edit summary
- 12:4212:42, 19 June 2012 diff hist +2 Filters No edit summary
- 12:4112:41, 19 June 2012 diff hist +342 N Filters Created page with "In most analysis you are only interested in a subset of sites and not all sites. Currently we have the following filter options. 1. ;-minMaf float: only work with sites with..."
- 12:3412:34, 19 June 2012 diff hist +107 SNP Calling No edit summary current
- 12:3312:33, 19 June 2012 diff hist +444 SNP Calling No edit summary
- 12:2012:20, 19 June 2012 diff hist +94 Allele Frequencies →Estimator from sequencing data
- 12:1812:18, 19 June 2012 diff hist +73 Genotype calling No edit summary
- 12:1512:15, 19 June 2012 diff hist +107 N SNP Calling Created page with "angsd can estimate and LRT for the site being variable. This works in tandem with -doMAF and -doMajorMinor."
- 12:0112:01, 19 June 2012 diff hist −265 SFS Estimation →Full example for simulating nextgen data and estimating SFS (somewhat deprecated should use sfstools now)
- 11:3411:34, 19 June 2012 diff hist +31 SFS Estimation →realSFS
- 11:3311:33, 19 June 2012 diff hist −41 SFS Estimation →realSFS
- 11:3111:31, 19 June 2012 diff hist −2 Input →tglf
- 11:3011:30, 19 June 2012 diff hist −6 Input →tglf
- 11:3011:30, 19 June 2012 diff hist +258 Input →tglf