ANGSD: Analysis of next generation Sequencing Data
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User contributions for Thorfinn
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16 January 2014
- 14:5414:54, 16 January 2014 diff hist 0 ANGSD No edit summary
- 13:1413:14, 16 January 2014 diff hist 0 ANGSD →Synopsis
- 02:5702:57, 16 January 2014 diff hist −4 Genotype Likelihoods →Example
- 02:5602:56, 16 January 2014 diff hist −1 Association →Example
- 02:5502:55, 16 January 2014 diff hist +7 Association →Example
- 02:5502:55, 16 January 2014 diff hist −11 Genotype calling →example
- 02:5402:54, 16 January 2014 diff hist +24 Allele Frequencies →.mafs
- 02:5302:53, 16 January 2014 diff hist −4 Beagle input →Example
- 02:5202:52, 16 January 2014 diff hist +3 Citing angsd →SNP calling
- 02:5202:52, 16 January 2014 diff hist −10 Quick Start →Generate Beagle Likelihood files
- 02:5102:51, 16 January 2014 diff hist 0 Quick Start →Download and prepare
- 02:5002:50, 16 January 2014 diff hist −5 Genotype likelihoods from alignments new →Example
- 02:5002:50, 16 January 2014 diff hist −4 Plink →Example
- 02:4902:49, 16 January 2014 diff hist +17 SNP calling →example
- 02:4902:49, 16 January 2014 diff hist +6 SNP calling →example
- 02:4802:48, 16 January 2014 diff hist −167 SNP calling →Likelihood ratio test
- 02:4602:46, 16 January 2014 diff hist −6 Filters →Examples
- 02:4502:45, 16 January 2014 diff hist +3 Misc example →Using tglf files
- 02:4402:44, 16 January 2014 diff hist +57 Allele Frequencies →Brief Overview
- 02:4202:42, 16 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 02:4202:42, 16 January 2014 diff hist 0 Installation No edit summary
- 02:4102:41, 16 January 2014 diff hist +174 ANGSD No edit summary
- 02:3802:38, 16 January 2014 diff hist +7 ANGSD No edit summary
- 02:3802:38, 16 January 2014 diff hist −328 ANGSD No edit summary
- 02:2002:20, 16 January 2014 diff hist +174 Change log →ANGSD
14 January 2014
- 23:5123:51, 14 January 2014 diff hist −63 Quick Start No edit summary
13 January 2014
- 13:0813:08, 13 January 2014 diff hist +556 User:Thorfinn No edit summary
10 January 2014
- 19:2719:27, 10 January 2014 diff hist +99 Quick Start →Generate Beagle Likelihood files
- 19:2619:26, 10 January 2014 diff hist +932 Quick Start →Generate Beagle Likelihood files
- 19:2419:24, 10 January 2014 diff hist +150 Quick Start →Generate Beagle Likelihood files
- 19:2219:22, 10 January 2014 diff hist −3 Quick Start →Generate Beagle Likelihood files
- 19:2219:22, 10 January 2014 diff hist +1,046 Quick Start →Examples
- 19:1919:19, 10 January 2014 diff hist +226 Quick Start →Generate Beagle Likelihood files
- 19:1519:15, 10 January 2014 diff hist +38 Quick Start →Examples
- 19:0719:07, 10 January 2014 diff hist +441 Quick Start →Calculate Allele frequencies
- 19:0519:05, 10 January 2014 diff hist +886 Quick Start →Calculate Allele frequencies
- 19:0319:03, 10 January 2014 diff hist +297 Quick Start →adf
- 19:0219:02, 10 January 2014 diff hist +10 Quick Start →adf
- 19:0219:02, 10 January 2014 diff hist +1 Quick Start →adf
- 19:0219:02, 10 January 2014 diff hist +2 Quick Start →adf
- 19:0119:01, 10 January 2014 diff hist +9 Quick Start →adf
- 19:0019:00, 10 January 2014 diff hist −11 Quick Start →adf
- 18:5518:55, 10 January 2014 diff hist −2 Quick Start →adf
- 18:5518:55, 10 January 2014 diff hist +5 Quick Start →Calculate Allele frequencies
- 18:5518:55, 10 January 2014 diff hist −5 Quick Start →Calculate Allele frequencies
- 18:5418:54, 10 January 2014 diff hist +23 Quick Start →Calculate Allele frequencies
- 18:5418:54, 10 January 2014 diff hist +106 Quick Start →Calculate Allele frequencies
- 18:5318:53, 10 January 2014 diff hist −313 Quick Start →Calculate Allele frequencies
- 18:5218:52, 10 January 2014 diff hist +32 Quick Start →Calculate Allele frequencies
- 18:5018:50, 10 January 2014 diff hist +45 Quick Start →Calculate Allele frequencies
- 18:5018:50, 10 January 2014 diff hist +701 Quick Start →Calculate Allele frequencies
- 18:4918:49, 10 January 2014 diff hist −100 Quick Start →Calculate Allele frequencies
- 18:4918:49, 10 January 2014 diff hist −676 Quick Start →Calculate Allele frequencies
- 18:4818:48, 10 January 2014 diff hist +450 Quick Start →Calculate Allele frequencies
- 18:4618:46, 10 January 2014 diff hist +1,078 Quick Start →Calculate Allele frequencies
- 18:4218:42, 10 January 2014 diff hist +110 Quick Start →Calculate Allele frequencies
- 18:4118:41, 10 January 2014 diff hist +123 Quick Start →Calculate Allele frequencies
- 18:3618:36, 10 January 2014 diff hist −1 Quick Start →Calculate Allele frequencies
- 18:2718:27, 10 January 2014 diff hist +48 Change log →ANGSD
- 18:2618:26, 10 January 2014 diff hist −105 MediaWiki:Sitenotice No edit summary
- 18:2518:25, 10 January 2014 diff hist 0 Installation No edit summary
- 18:2518:25, 10 January 2014 diff hist 0 ANGSD No edit summary
- 15:1915:19, 10 January 2014 diff hist −247 User:Thorfinn No edit summary
- 02:0302:03, 10 January 2014 diff hist 0 Installation No edit summary
- 01:4501:45, 10 January 2014 diff hist +28 Change log →ANGSD
- 01:3101:31, 10 January 2014 diff hist −17,852 Tutorial Replaced content with "<pre> This page might be outdated, please see the 'Quick Start' shown in sidebar. </pre>" current
9 January 2014
- 16:0316:03, 9 January 2014 diff hist 0 ANGSD No edit summary
- 16:0216:02, 9 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
- 15:5815:58, 9 January 2014 diff hist +314 Change log →ANGSD
- 15:5115:51, 9 January 2014 diff hist +5 User:Thorfinn No edit summary
- 14:2314:23, 9 January 2014 diff hist +5 User:Thorfinn No edit summary
- 14:0214:02, 9 January 2014 diff hist +8 User:Thorfinn No edit summary
- 14:0214:02, 9 January 2014 diff hist +6 User:Thorfinn No edit summary
- 13:5713:57, 9 January 2014 diff hist +5 User:Thorfinn No edit summary
- 13:4713:47, 9 January 2014 diff hist +12 User:Thorfinn No edit summary
- 13:4413:44, 9 January 2014 diff hist +225 Genotype Likelihoods No edit summary
8 January 2014
- 18:2418:24, 8 January 2014 diff hist +85 User:Thorfinn No edit summary
- 15:2015:20, 8 January 2014 diff hist 0 Abbababa →Brief Overview
- 00:5700:57, 8 January 2014 diff hist +13 User:Thorfinn No edit summary
- 00:5500:55, 8 January 2014 diff hist 0 MediaWiki:Sitenotice No edit summary
7 January 2014
- 21:3421:34, 7 January 2014 diff hist +33 User:Thorfinn No edit summary
- 19:1619:16, 7 January 2014 diff hist +26 User:Thorfinn No edit summary
- 05:2905:29, 7 January 2014 diff hist +276 Change log →ANGSD
- 04:5104:51, 7 January 2014 diff hist +9 HWE and Inbreeding estimates No edit summary
- 04:5104:51, 7 January 2014 diff hist +94 HWE and Inbreeding estimates No edit summary
- 04:4804:48, 7 January 2014 diff hist 0 Installation →Unix
- 04:4704:47, 7 January 2014 diff hist −368 Installation No edit summary
- 04:4704:47, 7 January 2014 diff hist 0 ANGSD No edit summary
- 03:5003:50, 7 January 2014 diff hist +5 Allele Frequencies No edit summary
- 03:4703:47, 7 January 2014 diff hist +2 Allele Frequencies No edit summary
- 03:4703:47, 7 January 2014 diff hist +77 Allele Frequencies No edit summary
- 03:4103:41, 7 January 2014 diff hist +32 Allele Frequencies No edit summary
- 03:4103:41, 7 January 2014 diff hist +2 Allele Frequencies No edit summary
- 03:4003:40, 7 January 2014 diff hist +17 Allele Frequencies No edit summary
- 03:4003:40, 7 January 2014 diff hist +12 Allele Frequencies No edit summary
- 03:3903:39, 7 January 2014 diff hist +1,205 Allele Frequencies Undo revision 1594 by Thorfinn (talk)
- 03:3903:39, 7 January 2014 diff hist −1,205 Allele Frequencies →Allele Frequency estimation
- 03:3803:38, 7 January 2014 diff hist +139 Allele Frequencies →Brief Overview
6 January 2014
- 15:4815:48, 6 January 2014 diff hist +8 HWE and Inbreeding estimates No edit summary
- 15:4815:48, 6 January 2014 diff hist +104 HWE and Inbreeding estimates No edit summary
- 15:4715:47, 6 January 2014 diff hist −931 HWE and Inbreeding estimates No edit summary
5 January 2014
- 00:1600:16, 5 January 2014 diff hist +2 Error estimation →Method 2
3 January 2014
- 14:1814:18, 3 January 2014 diff hist +40 User:Thorfinn No edit summary
- 14:1614:16, 3 January 2014 diff hist +67 User:Thorfinn No edit summary
29 December 2013
- 20:1820:18, 29 December 2013 diff hist +30 User:Thorfinn No edit summary
23 December 2013
- 19:4019:40, 23 December 2013 diff hist +111 N User:Albrecht Created page with "# Write about downsampling and allelic balance for abbabababababababab test. # Please write about error theory."
- 16:5916:59, 23 December 2013 diff hist +157 Error estimation →Error estimation from polymorphic sites
19 December 2013
- 18:1818:18, 19 December 2013 diff hist +1 Quick Start →Calculate Allele frequencies
- 18:1818:18, 19 December 2013 diff hist +32 Quick Start →Calculate Allele frequencies
- 18:1818:18, 19 December 2013 diff hist −15 Quick Start →Calculate Allele frequencies
- 18:1418:14, 19 December 2013 diff hist +688 Quick Start →Calculate Allele frequencies
- 18:1118:11, 19 December 2013 diff hist +32 N Allele Frequency estimation Thorfinn moved page Allele Frequency estimation to Allele Frequencies current
- 18:1118:11, 19 December 2013 diff hist 0 m Allele Frequencies Thorfinn moved page Allele Frequency estimation to Allele Frequencies
- 18:1118:11, 19 December 2013 diff hist −262 Quick Start →Calculate Allele frequencies
- 18:0918:09, 19 December 2013 diff hist +92 Quick Start →Download and prepare
17 December 2013
- 23:5523:55, 17 December 2013 diff hist +975 Allele Frequencies →Theory
- 23:5423:54, 17 December 2013 diff hist −979 Allele Frequencies →Allele frequencies from genotype likelihoods
- 23:5223:52, 17 December 2013 diff hist +10 Allele Frequencies →Output data
- 23:4923:49, 17 December 2013 diff hist +131 Quick Start No edit summary
- 23:4223:42, 17 December 2013 diff hist +32 Quick Start →Examples
- 23:4123:41, 17 December 2013 diff hist −108 Quick Start →Whats on this page
- 23:3823:38, 17 December 2013 diff hist +97 Quick Start No edit summary
- 23:3623:36, 17 December 2013 diff hist +181 Quick Start →Download and prepare
- 23:3323:33, 17 December 2013 diff hist +8 Quick Start →Download and prepare
- 23:3123:31, 17 December 2013 diff hist +26 N Download and installation Thorfinn moved page Download and installation to Installation current
- 23:3123:31, 17 December 2013 diff hist 0 m Installation Thorfinn moved page Download and installation to Installation
- 23:3023:30, 17 December 2013 diff hist +277 Quick Start →Download and prepare
- 23:2623:26, 17 December 2013 diff hist +247 Quick Start →Download and prepare
- 23:2223:22, 17 December 2013 diff hist +24 Quick Start No edit summary
- 23:2123:21, 17 December 2013 diff hist +2 Tutorial No edit summary
- 23:2023:20, 17 December 2013 diff hist +13 Tutorial No edit summary
- 23:1923:19, 17 December 2013 diff hist +74 Tutorial No edit summary
- 23:1823:18, 17 December 2013 diff hist +98 Quick Start No edit summary
- 23:1523:15, 17 December 2013 diff hist +9 MediaWiki:Sidebar No edit summary
- 23:1423:14, 17 December 2013 diff hist +25 N Quick start Thorfinn moved page Quick start to Quick Start current
- 23:1423:14, 17 December 2013 diff hist 0 m Quick Start Thorfinn moved page Quick start to Quick Start
- 19:0219:02, 17 December 2013 diff hist −4 Changes No edit summary current
- 16:2216:22, 17 December 2013 diff hist −64 ANGSD No edit summary
- 16:0016:00, 17 December 2013 diff hist +48 MediaWiki:Sitenotice No edit summary
- 15:5515:55, 17 December 2013 diff hist −26 MediaWiki:Sitenotice No edit summary
- 15:5515:55, 17 December 2013 diff hist +52 MediaWiki:Sitenotice No edit summary
- 15:5415:54, 17 December 2013 diff hist +1 Changes No edit summary
- 15:5315:53, 17 December 2013 diff hist +1 MediaWiki:Sitenotice No edit summary
- 15:5315:53, 17 December 2013 diff hist −13 MediaWiki:Sitenotice No edit summary
- 15:5315:53, 17 December 2013 diff hist −219 MediaWiki:Sitenotice No edit summary
- 15:5215:52, 17 December 2013 diff hist +520 N Changes Created page with "* SFStools is now included in main ANGSD, this will allow double keeping of annoying big files. * -filter is now called -sites, which makes more sense. Since it was a site fil..."
- 15:4315:43, 17 December 2013 diff hist +121 Allele Frequencies No edit summary
- 15:2515:25, 17 December 2013 diff hist +66 Thetas,Tajima,Neutrality tests →Example
- 15:1915:19, 17 December 2013 diff hist +9 Allele Frequencies No edit summary
- 15:1815:18, 17 December 2013 diff hist +57 Allele Frequencies No edit summary
- 15:1715:17, 17 December 2013 diff hist +223 Allele Frequencies No edit summary
- 15:1215:12, 17 December 2013 diff hist +770 Allele Frequencies No edit summary
- 14:5814:58, 17 December 2013 diff hist +7 SFS Estimation →Brief Overview
- 14:5814:58, 17 December 2013 diff hist +7 MediaWiki:Sidebar No edit summary
- 14:5714:57, 17 December 2013 diff hist 0 m SFS Estimation Thorfinn moved page SFS estimation to SFS Estimation
- 14:4914:49, 17 December 2013 diff hist −2,345 Sites No edit summary
- 13:5513:55, 17 December 2013 diff hist +7 Fst PCA No edit summary
- 13:5413:54, 17 December 2013 diff hist −4 RealSFS No edit summary
- 13:5313:53, 17 December 2013 diff hist +82 Misc example No edit summary
- 13:5113:51, 17 December 2013 diff hist +3 Thetas,Tajima,Neutrality tests No edit summary
- 13:4913:49, 17 December 2013 diff hist +59 SFS Estimation No edit summary
- 13:4813:48, 17 December 2013 diff hist −8 SFS Estimation No edit summary
- 13:4613:46, 17 December 2013 diff hist −8 SFS Estimation →Options
- 13:4513:45, 17 December 2013 diff hist −21 SFS Estimation →options
- 13:4113:41, 17 December 2013 diff hist +152 SFS Estimation →Brief Overview
- 13:3913:39, 17 December 2013 diff hist −2 SFS Estimation No edit summary
- 13:3813:38, 17 December 2013 diff hist 0 Installation No edit summary
- 13:3713:37, 17 December 2013 diff hist 0 ANGSD No edit summary
- 13:3713:37, 17 December 2013 diff hist +105 Change log →ANGSD
- 12:2412:24, 17 December 2013 diff hist −306 User:Thorfinn Blanked the page
16 December 2013
- 19:1119:11, 16 December 2013 diff hist 0 User:Thorfinn No edit summary
- 19:1019:10, 16 December 2013 diff hist +284 User:Thorfinn No edit summary
- 14:4414:44, 16 December 2013 diff hist +6 Fasta →Brief Overview
11 December 2013
- 21:1721:17, 11 December 2013 diff hist 0 m SFS Estimation Thorfinn moved page RealSFS to SFS estimation
- 18:3418:34, 11 December 2013 diff hist −2 Input →example
- 18:3318:33, 11 December 2013 diff hist −3 Input →options
- 18:3318:33, 11 December 2013 diff hist 0 Input No edit summary
- 18:3218:32, 11 December 2013 diff hist +50 Input No edit summary
- 18:2818:28, 11 December 2013 diff hist +352 Input →Genotype Probability Files
- 18:1318:13, 11 December 2013 diff hist −19 Input →genotype probability files
- 18:1218:12, 11 December 2013 diff hist +100 Input →glfv3
- 18:1218:12, 11 December 2013 diff hist 0 Input →genotype likelihood files
- 18:1118:11, 11 December 2013 diff hist −68 Input →Brief Overview
- 18:1118:11, 11 December 2013 diff hist 0 Input →arguments
- 18:0818:08, 11 December 2013 diff hist +1 Input →Brief Overview
- 18:0818:08, 11 December 2013 diff hist +1,420 Input →BAM files
- 18:0718:07, 11 December 2013 diff hist +42 Input No edit summary
- 18:0518:05, 11 December 2013 diff hist −27 Filters →Extra
- 18:0518:05, 11 December 2013 diff hist +164 Filters →Extra
- 18:0418:04, 11 December 2013 diff hist +73 Filters →Extra
- 18:0218:02, 11 December 2013 diff hist +34 N Genotype likelihoods Thorfinn moved page Genotype likelihoods to Genotype Likelihoods current
- 18:0218:02, 11 December 2013 diff hist 0 m Genotype Likelihoods Thorfinn moved page Genotype likelihoods to Genotype Likelihoods
- 18:0118:01, 11 December 2013 diff hist +164 Filters →Number of non missing individuals
- 17:5917:59, 11 December 2013 diff hist 0 Filters →Selected Regions
- 17:5617:56, 11 December 2013 diff hist 0 Filters →Extra
- 17:5617:56, 11 December 2013 diff hist +61 Filters →Polymorphic sites
- 17:5517:55, 11 December 2013 diff hist +61 Filters →Allele frequencies
- 16:4416:44, 11 December 2013 diff hist −7 MediaWiki:Sidebar No edit summary
- 16:4216:42, 11 December 2013 diff hist −1,933 User:Thorfinn Blanked the page
- 16:3916:39, 11 December 2013 diff hist 0 Filters →polymorphic sites
- 16:3816:38, 11 December 2013 diff hist +1,929 Filters →Extra
- 16:3816:38, 11 December 2013 diff hist −1,919 Filters →Number of non missing individuals
- 16:3816:38, 11 December 2013 diff hist +168 Filters →Extra
- 16:3616:36, 11 December 2013 diff hist −2 Filters →Extra
- 16:3616:36, 11 December 2013 diff hist 0 Filters →Extra
- 16:3516:35, 11 December 2013 diff hist +95 Filters →Deprecated options
- 16:3416:34, 11 December 2013 diff hist +43 Filters No edit summary
- 16:3116:31, 11 December 2013 diff hist +70 Filters No edit summary
- 16:3016:30, 11 December 2013 diff hist +511 Filters No edit summary
- 16:2516:25, 11 December 2013 diff hist −209 Filters →Selected Regions
- 16:2416:24, 11 December 2013 diff hist −1,612 Filters →Selected Sites
- 16:2316:23, 11 December 2013 diff hist +290 Filters →Selected Sites
- 16:2116:21, 11 December 2013 diff hist +267 Filters →Selected Regions
- 16:1916:19, 11 December 2013 diff hist +567 Filters →Selected Regions
- 16:1816:18, 11 December 2013 diff hist +47 Filters No edit summary
- 16:1816:18, 11 December 2013 diff hist +91 Filters →Read level filters
- 16:1716:17, 11 December 2013 diff hist −515 Filters →Read level filters
- 16:1716:17, 11 December 2013 diff hist +1,108 Filters →Read level filters
- 16:1616:16, 11 December 2013 diff hist −144 Filters →Main
- 16:1416:14, 11 December 2013 diff hist 0 Input →optional arguments
- 16:1216:12, 11 December 2013 diff hist −123 Filters →Version Notice
- 16:1116:11, 11 December 2013 diff hist +18 Filters No edit summary
- 16:1016:10, 11 December 2013 diff hist +81 Filters No edit summary
- 16:0416:04, 11 December 2013 diff hist +119 Filters No edit summary
- 16:0216:02, 11 December 2013 diff hist +136 Filters No edit summary
- 15:5815:58, 11 December 2013 diff hist +150 Filters No edit summary
- 15:0315:03, 11 December 2013 diff hist +19 N Filters2 Thorfinn moved page Filters2 to Sites current
- 15:0315:03, 11 December 2013 diff hist 0 m Sites Thorfinn moved page Filters2 to Sites
- 15:0315:03, 11 December 2013 diff hist −99 Sites →Internal representation
- 15:0015:00, 11 December 2013 diff hist +62 Sites →Details
- 14:5914:59, 11 December 2013 diff hist +245 Sites →Details
- 14:5714:57, 11 December 2013 diff hist +33 Sites →Details
- 14:5514:55, 11 December 2013 diff hist +16 Sites →Details
- 14:5514:55, 11 December 2013 diff hist −7 Sites →Selected Sites
- 14:5514:55, 11 December 2013 diff hist −137 Sites →Main
- 14:5414:54, 11 December 2013 diff hist +174 Sites No edit summary
- 14:5214:52, 11 December 2013 diff hist +342 Sites →Version notice
- 14:5114:51, 11 December 2013 diff hist +218 Sites No edit summary
- 14:4814:48, 11 December 2013 diff hist +67 Sites No edit summary
- 12:4812:48, 11 December 2013 diff hist +2 User:Thorfinn No edit summary
- 11:5311:53, 11 December 2013 diff hist +121 Change log →ANGSD
- 11:0811:08, 11 December 2013 diff hist +35 User:Thorfinn No edit summary
10 December 2013
- 19:0719:07, 10 December 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 11:4011:40, 10 December 2013 diff hist +4 Genotype Likelihoods →SYK genotype likelihoods
9 December 2013
- 10:2810:28, 9 December 2013 diff hist +29 User:Thorfinn No edit summary
8 December 2013
- 23:3323:33, 8 December 2013 diff hist +4 ANGSD →About
- 23:3223:32, 8 December 2013 diff hist +2 ANGSD →About
- 23:3223:32, 8 December 2013 diff hist 0 ANGSD No edit summary
- 23:3123:31, 8 December 2013 diff hist +12 ANGSD No edit summary
- 23:2523:25, 8 December 2013 diff hist +8 MediaWiki:Sitenotice No edit summary
- 19:4519:45, 8 December 2013 diff hist +47 User:Thorfinn No edit summary
- 19:1719:17, 8 December 2013 diff hist +41 User:Thorfinn No edit summary
7 December 2013
- 23:2423:24, 7 December 2013 diff hist +1,644 User:Thorfinn No edit summary
- 19:3319:33, 7 December 2013 diff hist +289 Genotype calling No edit summary
- 19:1119:11, 7 December 2013 diff hist +143 Change log →ANGSD
- 19:0819:08, 7 December 2013 diff hist +84 Change log →ANGSD
- 19:0719:07, 7 December 2013 diff hist +79 Change log →ANGSD
- 18:5818:58, 7 December 2013 diff hist −851 User:Thorfinn No edit summary
- 18:4918:49, 7 December 2013 diff hist +236 Major Minor →Forcing Major/minor
- 18:4618:46, 7 December 2013 diff hist +51 Major Minor →From Genotype Likelihoods
- 18:4618:46, 7 December 2013 diff hist +150 Major Minor →Details
- 18:3918:39, 7 December 2013 diff hist −206 Major Minor →From genotype probability data
- 18:3418:34, 7 December 2013 diff hist −100 Major Minor →Inferring Major and Minor alleles
- 18:3018:30, 7 December 2013 diff hist −311 Major Minor →arguments
- 18:2918:29, 7 December 2013 diff hist +27 Major Minor No edit summary
- 18:2618:26, 7 December 2013 diff hist +470 Major Minor →arguments
- 18:2118:21, 7 December 2013 diff hist +29 Error estimation →Options
- 18:1318:13, 7 December 2013 diff hist +243 Genotype Likelihoods →Simple Text Format
- 18:1218:12, 7 December 2013 diff hist +792 Genotype Likelihoods →Simple Text Format
- 18:0818:08, 7 December 2013 diff hist 0 Genotype Likelihoods →simple text format
- 18:0718:07, 7 December 2013 diff hist +177 Genotype Likelihoods →Binary
- 18:0518:05, 7 December 2013 diff hist 0 Genotype Likelihoods →output
- 18:0418:04, 7 December 2013 diff hist +2 Genotype Likelihoods →Beagle format
- 18:0418:04, 7 December 2013 diff hist +36 Genotype Likelihoods →Beagle format
- 18:0418:04, 7 December 2013 diff hist +59 Genotype Likelihoods →Binary
- 18:0218:02, 7 December 2013 diff hist +1 Genotype Likelihoods →Filtering
- 18:0218:02, 7 December 2013 diff hist −1 Genotype Likelihoods →Filtering
- 18:0118:01, 7 December 2013 diff hist +23 Genotype Likelihoods →Filtering
- 18:0018:00, 7 December 2013 diff hist +104 Genotype Likelihoods →Options
- 17:5917:59, 7 December 2013 diff hist +173 Genotype Likelihoods →Examples
- 17:5717:57, 7 December 2013 diff hist −27 Genotype Likelihoods →SYK (Kim et al.)
- 17:5617:56, 7 December 2013 diff hist −138 Genotype Likelihoods →SOAPsnp Example
- 17:5517:55, 7 December 2013 diff hist −54 Genotype Likelihoods →example
- 17:5417:54, 7 December 2013 diff hist −163 Genotype Likelihoods →options
- 17:5417:54, 7 December 2013 diff hist +275 Genotype Likelihoods →Options
- 17:5417:54, 7 December 2013 diff hist −305 Genotype Likelihoods →soapSNP details
- 17:5317:53, 7 December 2013 diff hist −49 Genotype Likelihoods →Options
- 17:5217:52, 7 December 2013 diff hist +74 Genotype Likelihoods →Options
- 17:4817:48, 7 December 2013 diff hist −4 Genotype Likelihoods →soapSNP
- 17:4717:47, 7 December 2013 diff hist +4 Genotype Likelihoods →Options
- 17:4717:47, 7 December 2013 diff hist +9 Genotype Likelihoods →Options
- 17:4717:47, 7 December 2013 diff hist −170 Genotype Likelihoods →GATK
- 17:4217:42, 7 December 2013 diff hist +257 Genotype Likelihoods →Options
- 17:3817:38, 7 December 2013 diff hist +1 Genotype Likelihoods →Options
- 17:3717:37, 7 December 2013 diff hist +99 Genotype Likelihoods →Options
- 17:3417:34, 7 December 2013 diff hist +20 Genotype Likelihoods →Options
- 17:2817:28, 7 December 2013 diff hist +72 Genotype Likelihoods →Options
- 17:2817:28, 7 December 2013 diff hist +8 Genotype Likelihoods →Options
- 17:2717:27, 7 December 2013 diff hist −2 Genotype Likelihoods →Options
- 17:2717:27, 7 December 2013 diff hist +272 Genotype Likelihoods →Options
- 17:2017:20, 7 December 2013 diff hist +58 Genotype Likelihoods →Options
- 17:2017:20, 7 December 2013 diff hist −32 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:1917:19, 7 December 2013 diff hist +119 Genotype Likelihoods No edit summary
- 17:1417:14, 7 December 2013 diff hist +563 Genotype Likelihoods →Genotype likelihoods from alignments
- 17:1117:11, 7 December 2013 diff hist +1 Genotype Likelihoods No edit summary
- 17:0917:09, 7 December 2013 diff hist −13 Genotype Likelihoods No edit summary
- 17:0717:07, 7 December 2013 diff hist −6 Genotype Likelihoods No edit summary
- 17:0517:05, 7 December 2013 diff hist +20 Genotype Likelihoods No edit summary
- 17:0417:04, 7 December 2013 diff hist +34 N Genotype likelihoods from alignments Thorfinn moved page Genotype likelihoods from alignments to Genotype likelihoods current
- 17:0417:04, 7 December 2013 diff hist 0 m Genotype Likelihoods Thorfinn moved page Genotype likelihoods from alignments to Genotype likelihoods
- 17:0417:04, 7 December 2013 diff hist +31 Genotype Likelihoods No edit summary
- 16:5716:57, 7 December 2013 diff hist +1 Genotype Likelihoods No edit summary
- 16:5716:57, 7 December 2013 diff hist +7 Genotype Likelihoods No edit summary
- 16:5616:56, 7 December 2013 diff hist +55 Genotype Likelihoods No edit summary
- 16:4416:44, 7 December 2013 diff hist +124 Genotype Likelihoods No edit summary
- 16:3616:36, 7 December 2013 diff hist +1,277 Error estimation →Output
- 16:3416:34, 7 December 2013 diff hist +63 Error estimation No edit summary
- 16:3216:32, 7 December 2013 diff hist 0 N File:ErrorEstOverall.png No edit summary current
- 16:3216:32, 7 December 2013 diff hist 0 N File:ErrorEst.png No edit summary current
- 16:2916:29, 7 December 2013 diff hist +226 Error estimation →Example
- 16:1816:18, 7 December 2013 diff hist +74 Error estimation →Output
- 16:1716:17, 7 December 2013 diff hist +1 Error estimation →Output
- 16:1716:17, 7 December 2013 diff hist +1 Error estimation →Output
- 16:1716:17, 7 December 2013 diff hist +81 Error estimation →Output
- 15:5815:58, 7 December 2013 diff hist 0 Error estimation →Options
- 15:5815:58, 7 December 2013 diff hist 0 Error estimation →Brief Overview
- 15:2015:20, 7 December 2013 diff hist +66 Error estimation →Theory
- 15:1815:18, 7 December 2013 diff hist +2 Error estimation →Options
- 15:1515:15, 7 December 2013 diff hist +3 Error estimation →Output
- 15:1515:15, 7 December 2013 diff hist +60 Error estimation →Output
- 15:1415:14, 7 December 2013 diff hist 0 Error estimation →example
- 15:1315:13, 7 December 2013 diff hist +37 Error estimation →Options
- 15:1215:12, 7 December 2013 diff hist −8 Error estimation →additional options
- 15:1115:11, 7 December 2013 diff hist +2 Error estimation →Brief Overview
- 15:1115:11, 7 December 2013 diff hist +10 Error estimation →Brief Overview
- 15:1015:10, 7 December 2013 diff hist +233 Error estimation →Brief Overview
- 15:0715:07, 7 December 2013 diff hist +162 Error estimation →Brief Overview
- 14:5814:58, 7 December 2013 diff hist +103 Error estimation →Brief Overview
- 14:4214:42, 7 December 2013 diff hist +6 Error estimation →Brief Overview
- 14:4214:42, 7 December 2013 diff hist +110 Error estimation →Brief Overview
- 14:1514:15, 7 December 2013 diff hist +251 Error estimation →Brief Overview
- 13:5713:57, 7 December 2013 diff hist +14 Error estimation →Error estimation using an outgroup and an error free individual
- 13:5413:54, 7 December 2013 diff hist +2 Error estimation →Options
- 13:5413:54, 7 December 2013 diff hist 0 Error estimation →options
- 13:5213:52, 7 December 2013 diff hist +100 Error estimation →Output
- 13:5113:51, 7 December 2013 diff hist +16 Error estimation No edit summary
6 December 2013
- 15:3215:32, 6 December 2013 diff hist 0 Abbababa →output
- 14:5414:54, 6 December 2013 diff hist −2 Error estimation →Output
- 14:5314:53, 6 December 2013 diff hist +69 Error estimation →Output
- 14:4914:49, 6 December 2013 diff hist 0 File:Error2.png Thorfinn uploaded a new version of "File:Error2.png" current
- 14:4814:48, 6 December 2013 diff hist 0 File:Error1.png Thorfinn uploaded a new version of "File:Error1.png" current
- 14:4514:45, 6 December 2013 diff hist 0 File:Error1.png Thorfinn uploaded a new version of "File:Error1.png"
- 14:4014:40, 6 December 2013 diff hist −52 Error estimation →Output
- 14:4014:40, 6 December 2013 diff hist +53 Error estimation →Output
- 14:3714:37, 6 December 2013 diff hist +26 Error estimation →Output
- 14:3614:36, 6 December 2013 diff hist +26 Error estimation →Output
- 14:3514:35, 6 December 2013 diff hist 0 N File:Error2.png No edit summary
- 14:3514:35, 6 December 2013 diff hist 0 File:Error1.png Thorfinn uploaded a new version of "File:Error1.png"
- 14:3314:33, 6 December 2013 diff hist 0 N File:Error1.png No edit summary
- 14:2714:27, 6 December 2013 diff hist 0 N File:Error1.pdf No edit summary current
- 14:2114:21, 6 December 2013 diff hist +299 Error estimation →Output
- 13:5513:55, 6 December 2013 diff hist −20 Error estimation →extra options
- 13:5213:52, 6 December 2013 diff hist −4 Error estimation →Brief Overview
- 13:5013:50, 6 December 2013 diff hist +574 Error estimation →Error estimation from polymorphic sites
- 13:4013:40, 6 December 2013 diff hist +157 Error estimation No edit summary
- 11:5511:55, 6 December 2013 diff hist +1,470 Error estimation →Method 2
- 11:5411:54, 6 December 2013 diff hist +35 Error estimation →Output
- 11:5411:54, 6 December 2013 diff hist 0 Error estimation →output
- 11:5411:54, 6 December 2013 diff hist +10 Error estimation No edit summary
- 11:5211:52, 6 December 2013 diff hist +69 Error estimation No edit summary
- 11:3311:33, 6 December 2013 diff hist −1 Error estimation →output
- 10:5810:58, 6 December 2013 diff hist +203 Error estimation No edit summary
- 02:5702:57, 6 December 2013 diff hist +20 User:Thorfinn No edit summary
5 December 2013
- 20:2920:29, 5 December 2013 diff hist +38 User:Thorfinn No edit summary
- 19:0519:05, 5 December 2013 diff hist +12 User:Thorfinn No edit summary
- 19:0519:05, 5 December 2013 diff hist +916 N User:Thorfinn Created page with "Thorfinns angsd todolist 1) write error estimation on wiki, need more info 2) Rscript ../../angsd0.565/R/estError.R Loading required package: remix Loading required package..."
- 18:4318:43, 5 December 2013 diff hist +76 Error estimation No edit summary
4 December 2013
- 20:0320:03, 4 December 2013 diff hist −18 Angsd structure No edit summary current
- 19:5519:55, 4 December 2013 diff hist +517 Angsd structure →Analysis
- 19:5419:54, 4 December 2013 diff hist +13 Angsd structure →Input formats
- 19:5219:52, 4 December 2013 diff hist +2 Angsd structure →Input formats
- 19:5219:52, 4 December 2013 diff hist +654 Angsd structure →Input formats
- 19:3619:36, 4 December 2013 diff hist +18 Angsd structure No edit summary
- 19:3619:36, 4 December 2013 diff hist +75 Angsd structure No edit summary
- 19:3519:35, 4 December 2013 diff hist +129 Angsd structure No edit summary
- 19:3519:35, 4 December 2013 diff hist +125 Angsd structure No edit summary
- 19:3319:33, 4 December 2013 diff hist −1,005 Angsd structure →History
- 19:3119:31, 4 December 2013 diff hist +1,227 N Angsd structure Created page with " ==History== 1) A simple program to estimate the MAF based on files containing the counts of allleles (-doPhat). Used in (yu li 2009) 2) An implementation of (suyeon kim 20..."
- 19:2819:28, 4 December 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 19:2819:28, 4 December 2013 diff hist −1 MediaWiki:Sidebar No edit summary
- 19:2619:26, 4 December 2013 diff hist +36 MediaWiki:Sidebar No edit summary
- 19:1319:13, 4 December 2013 diff hist 0 MediaWiki:Sidebar No edit summary
- 18:3118:31, 4 December 2013 diff hist 0 Installation No edit summary
- 18:3018:30, 4 December 2013 diff hist 0 ANGSD No edit summary
- 18:2518:25, 4 December 2013 diff hist +8 Abbababa No edit summary
- 18:2518:25, 4 December 2013 diff hist +83 Abbababa No edit summary
- 18:0218:02, 4 December 2013 diff hist +62 Genotype Likelihoods →example
- 17:5817:58, 4 December 2013 diff hist +7 Genotype Likelihoods →example
- 17:5317:53, 4 December 2013 diff hist −2 Genotype Likelihoods →binary
- 17:3217:32, 4 December 2013 diff hist 0 Genotype Likelihoods →output genotype likelihoods
- 15:4915:49, 4 December 2013 diff hist +225 Change log →ANGSD
3 December 2013
- 15:2215:22, 3 December 2013 diff hist −27 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2514:25, 3 December 2013 diff hist −16 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2514:25, 3 December 2013 diff hist −1 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2314:23, 3 December 2013 diff hist +1 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2314:23, 3 December 2013 diff hist +17 Genotype Likelihoods →SAMtools genotype likelihoods
- 14:2314:23, 3 December 2013 diff hist −4 Genotype Likelihoods →SAMtools genotype likelihoods
- 02:1502:15, 3 December 2013 diff hist +97 Bugs →small changes that would be nice
2 December 2013
- 20:1020:10, 2 December 2013 diff hist +2 Genotype Likelihoods →SAMtools genotype likelihoods
- 20:0920:09, 2 December 2013 diff hist +6 Genotype Likelihoods →SAMtools genotype likelihoods
- 20:0920:09, 2 December 2013 diff hist +95 Genotype Likelihoods →SAMtools genotype likelihoods
- 20:0220:02, 2 December 2013 diff hist −13 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:5618:56, 2 December 2013 diff hist +65 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:5118:51, 2 December 2013 diff hist +9 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4918:49, 2 December 2013 diff hist +7 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4818:48, 2 December 2013 diff hist +1 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4818:48, 2 December 2013 diff hist +13 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4718:47, 2 December 2013 diff hist +2 Genotype Likelihoods →SAMtools genotype likelihoods
- 18:4718:47, 2 December 2013 diff hist +32 Genotype Likelihoods →SAMtools genotype likelihoods
- 16:2716:27, 2 December 2013 diff hist +1 MediaWiki:Sidebar No edit summary
- 15:2315:23, 2 December 2013 diff hist +111 MediaWiki:Sitenotice No edit summary
- 15:2115:21, 2 December 2013 diff hist +13 Fasta No edit summary
- 15:2015:20, 2 December 2013 diff hist +12 Fasta No edit summary
- 14:4814:48, 2 December 2013 diff hist +197 Change log →ANGSD
1 December 2013
30 November 2013
- 18:2518:25, 30 November 2013 diff hist +1 Bugs No edit summary
- 18:2418:24, 30 November 2013 diff hist −2 Bugs No edit summary
- 18:2418:24, 30 November 2013 diff hist +59 Bugs No edit summary
29 November 2013
- 20:3120:31, 29 November 2013 diff hist +25 N Inferring Major and Minor alleles Thorfinn moved page Inferring Major and Minor alleles to Major Minor current
- 20:3120:31, 29 November 2013 diff hist 0 m Major Minor Thorfinn moved page Inferring Major and Minor alleles to Major Minor
- 20:2720:27, 29 November 2013 diff hist +3 MediaWiki:Sidebar No edit summary
- 20:2720:27, 29 November 2013 diff hist −8 MediaWiki:Sidebar No edit summary
- 20:1420:14, 29 November 2013 diff hist +8 MediaWiki:Sidebar No edit summary
- 20:1320:13, 29 November 2013 diff hist +16 MediaWiki:Sidebar Undo revision 1201 by Thorfinn (talk)
- 20:1220:12, 29 November 2013 diff hist −16 MediaWiki:Sidebar No edit summary
- 20:1120:11, 29 November 2013 diff hist +12 MediaWiki:Sidebar No edit summary
- 16:5016:50, 29 November 2013 diff hist +2 Allele Counts →Example
- 16:5016:50, 29 November 2013 diff hist +130 Allele Counts →Printing Counts per site
- 16:4916:49, 29 November 2013 diff hist −130 Allele Counts →Example
- 16:4816:48, 29 November 2013 diff hist +2 Allele Counts →qscore Distribution
- 16:4816:48, 29 November 2013 diff hist +2 Allele Counts →Depth Distribution
- 16:4716:47, 29 November 2013 diff hist −2 Allele Counts →qscore Distribution
- 16:4716:47, 29 November 2013 diff hist +2 Allele Counts →qscore Distribution
- 16:4716:47, 29 November 2013 diff hist +1 Allele Counts →Output formats
- 16:4616:46, 29 November 2013 diff hist +1,059 Allele Counts →Depth Distribution
- 16:4016:40, 29 November 2013 diff hist +138 Allele Counts →File dumping
- 16:3916:39, 29 November 2013 diff hist +72 Allele Counts →qscore Distribution
- 16:3816:38, 29 November 2013 diff hist +367 Allele Counts →qscore Distribution
- 16:3716:37, 29 November 2013 diff hist +62 Allele Counts →Printing Counts per site
- 16:3616:36, 29 November 2013 diff hist +90 Allele Counts No edit summary
- 16:3516:35, 29 November 2013 diff hist −130 Allele Counts →requred
- 16:3016:30, 29 November 2013 diff hist +110 Allele Counts →Printing Counts per site
- 16:2816:28, 29 November 2013 diff hist −42 Allele Counts →Printing Counts per site
- 16:2716:27, 29 November 2013 diff hist +4 Allele Counts →Printing Counts per site
- 16:2616:26, 29 November 2013 diff hist +516 Allele Counts →Printing Counts per site
- 16:2316:23, 29 November 2013 diff hist +1 Allele Counts →Printing Counts per site
- 16:2216:22, 29 November 2013 diff hist +9 Allele Counts →printing counts
- 16:2216:22, 29 November 2013 diff hist −4 Allele Counts →printing counts
- 16:2116:21, 29 November 2013 diff hist +60 Allele Counts →File dumping
- 16:2016:20, 29 November 2013 diff hist +61 Allele Counts →Filtering
- 16:1416:14, 29 November 2013 diff hist +214 Allele Counts →Filtering
- 16:1216:12, 29 November 2013 diff hist 0 Allele Counts No edit summary
- 16:1116:11, 29 November 2013 diff hist +63 Allele Counts →Filtering
- 16:1116:11, 29 November 2013 diff hist +89 Allele Counts →Options
- 16:0916:09, 29 November 2013 diff hist +27 N Alleles counts Thorfinn moved page Alleles counts to Allele Counts current
- 16:0916:09, 29 November 2013 diff hist 0 m Allele Counts Thorfinn moved page Alleles counts to Allele Counts
- 16:0616:06, 29 November 2013 diff hist +1 Allele Counts →Options
- 16:0416:04, 29 November 2013 diff hist +156 Allele Counts No edit summary
- 16:0216:02, 29 November 2013 diff hist +253 Allele Counts No edit summary
- 16:0016:00, 29 November 2013 diff hist −81 Allele Counts No edit summary
- 15:5815:58, 29 November 2013 diff hist +78 Allele Counts Undo revision 1164 by Thorfinn (talk)
- 15:5815:58, 29 November 2013 diff hist −78 Allele Counts No edit summary
- 15:5515:55, 29 November 2013 diff hist +75 Allele Counts No edit summary
- 15:5415:54, 29 November 2013 diff hist +8 Allele Counts No edit summary
- 15:4915:49, 29 November 2013 diff hist −109 Allele Counts →Allele counts
- 15:4915:49, 29 November 2013 diff hist −4 Allele Counts →Brief Overview
- 15:4615:46, 29 November 2013 diff hist +193 Allele Counts →Brief Overview
- 15:0915:09, 29 November 2013 diff hist 0 Allele Counts →Brief Overview
- 15:0915:09, 29 November 2013 diff hist +821 Allele Counts →Allele counts
- 15:0615:06, 29 November 2013 diff hist +1 Allele Counts No edit summary
- 15:0615:06, 29 November 2013 diff hist 0 Allele Counts No edit summary
- 15:0615:06, 29 November 2013 diff hist +200 Allele Counts No edit summary
- 15:0315:03, 29 November 2013 diff hist +4 ANGSD →Analysis from genotype probabilities
- 15:0315:03, 29 November 2013 diff hist −1 ANGSD No edit summary
28 November 2013
- 18:5118:51, 28 November 2013 diff hist 0 Fasta No edit summary
- 18:5018:50, 28 November 2013 diff hist 0 Fasta No edit summary
- 18:4818:48, 28 November 2013 diff hist +91 Fasta No edit summary
- 18:3818:38, 28 November 2013 diff hist +1 Fasta →Brief Overview
- 18:3818:38, 28 November 2013 diff hist +132 Fasta →Brief Overview
- 18:3618:36, 28 November 2013 diff hist +38 Fasta →Brief Overview
- 18:3518:35, 28 November 2013 diff hist +4 Fasta →Brief Overview
- 18:3418:34, 28 November 2013 diff hist +1 Fasta →Brief Overview
- 18:3318:33, 28 November 2013 diff hist +39 Fasta →Brief Overview
- 18:2618:26, 28 November 2013 diff hist +127 Fasta →Brief Overview
- 18:2218:22, 28 November 2013 diff hist +53 Fasta →Brief Overview
- 14:4514:45, 28 November 2013 diff hist +3 Fasta No edit summary
- 13:2613:26, 28 November 2013 diff hist +209 Fasta →Brief Overview
- 12:3812:38, 28 November 2013 diff hist +60 Fasta →Brief Overview
- 12:3712:37, 28 November 2013 diff hist +358 Fasta →Options
27 November 2013
- 20:4220:42, 27 November 2013 diff hist +3 Fasta No edit summary