ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
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- This page contains a short description of the overall structure of angsd. We have defined the following '''abstract base class''' called general.h ...2 KB (269 words) - 20:03, 4 December 2013
- ...om your population then we recommend that you use NGSrelate has works with ANGSD output. From the estimated IBD probabilities you can then infer the relatio {| class="wikitable" style="text-align: center ...5 KB (701 words) - 09:21, 29 August 2019
- Test for Hardy Weinberg equilibrium based on genotype likelihoods. This class works both as a filter for all other classes and outputs the results in a f ...''' and in the latest developmental version from [https://github.com/ANGSD/angsd github] ...3 KB (448 words) - 15:32, 23 October 2017
- ./angsd -gl 1 -anc ancestral -dosaf 1 ./angsd -gl 1 -anc ancestral -dosaf 1 -baq 1 -C 50 -minMapQ 30 -minQ 20 ...12 KB (1,931 words) - 16:22, 8 December 2023
- ...e latest developmental version can be found here [https://github.com/ANGSD/angsd github] {| class="wikitable" style="text-align: center ...12 KB (832 words) - 11:16, 14 July 2016
- Many methods in ANGSD are based on genotype likelihoods, and ANGSD has 4 different genotype likelihood models implemented. ./angsd -GL ...10 KB (1,409 words) - 10:56, 28 September 2021
- <div class="toccolours mw-collapsible mw-collapsed"> <pre class="mw-collapsible-content"> ...22 KB (3,264 words) - 15:32, 7 June 2023
- *0.937 https://github.com/ANGSD/angsd/compare/0.937...0.939 *0.935 https://github.com/ANGSD/angsd/compare/0.935...0.937 ...12 KB (1,833 words) - 13:59, 16 July 2022