ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User:Thorfinn: Difference between revisions
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#user custom class missing | #user custom class missing | ||
=Code fix= | =Code fix/cleanup= | ||
#check all getoptions stderr output. | |||
#-samglfclean not documented | #-samglfclean not documented | ||
#soap usage is not documented | #soap usage is not documented | ||
Revision as of 18:13, 5 March 2014
Wiki doc
- write how on website: Thetas,Tajima,Neutrality test needs documentation and examples files
- user custom class missing
Code fix/cleanup
- check all getoptions stderr output.
- -samglfclean not documented
- soap usage is not documented
- from morten shitoutput
h1 h2 h3 = 7 10 5 has less than 3 blocks. skipping h1 h2 h3 = 8 10 5 has less than 3 blocks. skipping h1 h2 h3 = 10 11 5 has less than 3 blocks. skipping h1 h2 h3 = 7 12 5 has less than 3 blocks. skipping h1 h2 h3 = 10 12 5 has less than 3 blocks. skipping h1 h2 h3 = 10 13 5 has less than 3 blocks. skipping h1 h2 h3 = 10 15 5 has less than 3 blocks. skipping h1 h2 h3 = 7 10 6 has less than 3 blocks. skipping h1 h2 h3 = 8 10 6 has less than 3 blocks. skipping h1 h2 h3 = 9 10 6 has less than 3 blocks. skipping h1…
Addtional methods and functionality
- make haploid 1dsfs
- simplefy filereading. from glf files
- fix -doFasta for single chromosomes.