ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.


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Major programmer

Thorfinn Korneliussen

Minor programmer

anders albrechtsen

Fililpe Vieira has been implementing changes to the frequency estimator. analysisMaf.cpp -> analysisMaf.inbreed.cpp some changes in angsd_realSFS.cpp And the analysisHWE.cpp

Matteo has been implementing the Fst and PCA which uses output from angsd.

Other people include

Rasmus Nielsen

Line Skotte


Some code is very 'inspired' by SAMtools (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by SOAPsnp