ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

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albrecht@binf.ku.dk
albrecht@binf.ku.dk


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Other people with ideas
Fililpe Vieira has been implementing changes to the frequency estimator.
analysisMaf.cpp -> analysisMaf.inbreed.cpp
some changes in angsd_realSFS.cpp
And the analysisHWE.cpp
 
Matteo has been implementing the Fst and PCA which uses output from angsd.
 
 
Other people include


Rasmus Nielsen
Rasmus Nielsen
rasmus@binf.ku.dk
rasmus@binf.ku.dk
Line Skotte
flotte@skotte.dk




==Disclaimer==
==Disclaimer==
Some code is very 'inspired' by [http://samtools.sourceforge.net/ SAMtools] (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by [[http://genome.cshlp.org/content/19/6/1124.full SOAPsnp]]
Some code is very 'inspired' by [http://samtools.sourceforge.net/ SAMtools] (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by [http://genome.cshlp.org/content/19/6/1124.full SOAPsnp]

Latest revision as of 12:50, 28 June 2013

Major programmer

Thorfinn Korneliussen thorfinn@binf.ku.dk

Minor programmer

anders albrechtsen albrecht@binf.ku.dk


Fililpe Vieira has been implementing changes to the frequency estimator. analysisMaf.cpp -> analysisMaf.inbreed.cpp some changes in angsd_realSFS.cpp And the analysisHWE.cpp

Matteo has been implementing the Fst and PCA which uses output from angsd.


Other people include

Rasmus Nielsen rasmus@binf.ku.dk

Line Skotte flotte@skotte.dk


Disclaimer

Some code is very 'inspired' by SAMtools (bamfile reading GL -1). The code for the SOAPsnp GL estimator is also very inspired by SOAPsnp