ANGSD: Analysis of next generation Sequencing Data
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MsToGlf: Difference between revisions
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For the [[Korneliussen2013]] paper, we simulated data according to genotypes simulated from ms/msms output. For this we used the msToGlf program found in the 'misc/' subfolder of the angsd tar ball. | For the [[Korneliussen2013]] paper, we simulated data according to genotypes simulated from ms/msms output. For this we used the msToGlf program found in the 'misc/' subfolder of the angsd tar ball. | ||
=Brief Overview= | =Brief Overview= | ||
<pre> | |||
./msToGlf | |||
Probs with args, supply -in -out | |||
also -err -depth -depthFile -singleOut -regLen -nind | |||
</pre> | |||
=Examples= | =Examples= | ||
==Standard neutral model== | ==Standard neutral model== | ||
==With Selection== | ==With Selection== | ||
==Two populations== | ==Two populations== | ||
Revision as of 21:41, 10 February 2014
For the Korneliussen2013 paper, we simulated data according to genotypes simulated from ms/msms output. For this we used the msToGlf program found in the 'misc/' subfolder of the angsd tar ball.
Brief Overview
./msToGlf Probs with args, supply -in -out also -err -depth -depthFile -singleOut -regLen -nind