ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.

Allele Counts

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Revision as of 16:15, 18 June 2012 by Albrecht (talk | contribs) (Created page with "==dumping counts== -dumpCounts 1, print overall depth in the .pos file -dumpCounts 2, 1) plus .counts with overall sample depth, each line nInd long -dumpCounts 3,...")
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dumping counts

 -dumpCounts 1, print overall depth in the .pos file
 
 -dumpCounts 2, 1) plus .counts with overall sample depth, each line nInd long
 
 -dumpCounts 3, 1) plus .coutns with count of A,C,G,T, each line 4*nInd long
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