ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Base quality: Difference between revisions
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(Created page with "=Base quality counts= Counts the number of bases for each quality. ==Example== Print the individuals depth from bam files <pre> ./angsd -out out -doCounts 1 -doQsDist 1 -ba...") |
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Revision as of 17:11, 19 September 2012
Base quality counts
Counts the number of bases for each quality.
Example
Print the individuals depth from bam files
./angsd -out out -doCounts 1 -doQsDist 1 -bam bam.filelist