ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Example of a quantitative phenotype file
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-999
2.06164722761138
-0.091935218675602
-0.287527686061831
-999
-999
-1.20996664036026
0.0188541092307412
-2.1122713873334
-999
-1.32920529536579
-1.10582299663753
-0.391773417823766
-0.501400984567535
-999
1.06014677976046
-1.10582299663753
-999
0.223156127557052
-0.189660869820135