ANGSD: Analysis of next generation Sequencing Data

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McKenna A, Hanna M, Banks E, Sivachenko A, Cibulskis K, Kernytsky A, Garimella K, Altshuler D, Gabriel S, Daly M, DePristo MA (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20:1297-303.

Bibtex

% 20644199 
@Article{pmid20644199,
   Author="McKenna, A.  and Hanna, M.  and Banks, E.  and Sivachenko, A.  and Cibulskis, K.  and Kernytsky, A.  and Garimella, K.  and Altshuler, D.  and Gabriel, S.  and Daly, M.  and DePristo, M. A. ",
   Title="{{T}he {G}enome {A}nalysis {T}oolkit: a {M}ap{R}educe framework for analyzing next-generation {D}{N}{A} sequencing data}",
   Journal="Genome Res.",
   Year="2010",
   Volume="20",
   Number="9",
   Pages="1297--1303",
   Month="Sep"
}

doi

doi: 10.1101/gr.107524