ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions
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- 18:45, 6 February 2023 (diff | hist) . . (+1) . . Fasta (→Ancestral fasta using multiple outgroup) (current)
- 18:45, 6 February 2023 (diff | hist) . . (+24) . . Fasta (→Ancestral fasta)
- 18:44, 6 February 2023 (diff | hist) . . (+49) . . Fasta (→Options)
- 18:43, 6 February 2023 (diff | hist) . . (+213) . . Fasta (→Ancestral fasta)
- 18:41, 6 February 2023 (diff | hist) . . (+807) . . Fasta (→Ancestral fasta)
- 18:32, 6 February 2023 (diff | hist) . . (+674) . . Fasta
- 18:22, 6 February 2023 (diff | hist) . . (+26) . . Allele Frequencies (→Brief Overview)
- 11:00, 28 September 2021 (diff | hist) . . (0) . . Allele Frequencies
- 10:59, 28 September 2021 (diff | hist) . . (-4) . . SNP calling (current)
- 10:57, 28 September 2021 (diff | hist) . . (0) . . Genotype likelihoods from alignments new (current)
- 10:57, 28 September 2021 (diff | hist) . . (0) . . Input (current)
- 10:56, 28 September 2021 (diff | hist) . . (0) . . Genotype Likelihoods (current)
- 17:26, 20 April 2020 (diff | hist) . . (+62) . . PCA MDS (→Options) (current)
- 09:21, 29 August 2019 (diff | hist) . . (+113) . . Relatedness (current)
- 10:57, 17 July 2019 (diff | hist) . . (-1) . . LD (current)
- 10:57, 17 July 2019 (diff | hist) . . (+106) . . N LD (Created page with " For estimation of LD based on genotype likelihoods you can use [(https://github.com/fgvieira/ngsLD ngsLD]")
- 10:54, 17 July 2019 (diff | hist) . . (+35) . . MediaWiki:Sidebar (current)
- 09:37, 4 October 2018 (diff | hist) . . (+2) . . PCA MDS (Undo revision 3053 by Albrecht (talk))
- 09:36, 4 October 2018 (diff | hist) . . (-2) . . PCA MDS (→Model)
- 09:35, 4 October 2018 (diff | hist) . . (+1) . . PCA MDS (→sampled bases *ibs.gz)
- 09:31, 4 October 2018 (diff | hist) . . (+4) . . PCA MDS (→sampled bases *ibs.gz)
- 14:14, 18 May 2018 (diff | hist) . . (+69) . . Genotype Likelihoods (→SYK (Kim et al.))
- 13:37, 30 April 2018 (diff | hist) . . (+27) . . N Dodepth (Redirected page to Allele Counts) (current)
- 13:36, 30 April 2018 (diff | hist) . . (+27) . . N Docounts (Redirected page to Allele Counts) (current)
- 12:02, 2 April 2018 (diff | hist) . . (+28) . . N Docount (Redirected page to Allele Counts) (current)
- 12:01, 2 April 2018 (diff | hist) . . (+30) . . N Dogeno (Redirected page to Genotype calling) (current)
- 12:00, 2 April 2018 (diff | hist) . . (+25) . . N Domajorminor (Redirected page to Major Minor) (current)
- 11:59, 2 April 2018 (diff | hist) . . (+32) . . N Rmtriallelic (Redirected page to Allele Frequencies) (current)
- 11:58, 2 April 2018 (diff | hist) . . (+32) . . N Snp pval (Redirected page to Allele Frequencies) (current)
- 11:57, 2 April 2018 (diff | hist) . . (+32) . . N Dopost (Redirected page to Allele Frequencies) (current)
- 11:56, 2 April 2018 (diff | hist) . . (+32) . . N Domaf (Redirected page to Allele Frequencies) (current)
- 11:53, 2 April 2018 (diff | hist) . . (+71) . . Allele Frequencies
- 11:52, 2 April 2018 (diff | hist) . . (-3) . . MediaWiki:Common.css (current)
- 11:50, 2 April 2018 (diff | hist) . . (+3) . . MediaWiki:Common.css
- 11:49, 2 April 2018 (diff | hist) . . (+54) . . Allele Frequencies
- 11:48, 2 April 2018 (diff | hist) . . (+82) . . N MediaWiki:Common.css (Created page with "→CSS placed here will be applied to all skins: .keywords { display: none; }")
- 17:39, 12 March 2018 (diff | hist) . . (+471) . . PCA MDS
- 16:59, 7 February 2018 (diff | hist) . . (-1) . . HWE and Inbreeding estimates (→Site estimate of inbreeding coefficient (HWE test)) (current)
- 16:58, 7 February 2018 (diff | hist) . . (-24) . . MediaWiki:Sidebar
- 16:56, 7 February 2018 (diff | hist) . . (+65) . . PCA (→single read sampling) (current)
- 16:55, 7 February 2018 (diff | hist) . . (+20) . . PCA (→NGS tools)
- 16:54, 7 February 2018 (diff | hist) . . (+729) . . PCA
- 16:54, 7 February 2018 (diff | hist) . . (0) . . N File:Pcangsd pca.png (current)
- 16:44, 7 February 2018 (diff | hist) . . (+303) . . NGSadmix (current)
- 16:15, 7 February 2018 (diff | hist) . . (+112) . . NGSadmix
- 16:15, 7 February 2018 (diff | hist) . . (0) . . N File:AdmixtureNGS.png (current)
- 14:59, 19 January 2018 (diff | hist) . . (+1) . . Genotype calling (→Options)
- 14:58, 19 January 2018 (diff | hist) . . (+95) . . Genotype calling (→Options)
- 10:32, 10 August 2017 (diff | hist) . . (+18) . . Association (→Output)
- 10:31, 10 August 2017 (diff | hist) . . (+95) . . Association (→problems with inflation of p-values)
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