ANGSD: Analysis of next generation Sequencing Data

Latest tar.gz version is (0.934/0.935 on github), see Change_log for changes, and download it here.

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How to deploy

This page described how a new version should be put on wiki and github

Make a combined angsd htslib to put on wiki download

copy latest and make a new annotated tag and push to wiki

VERSION=0.934
mkdir delme
cd delme
git clone --depth=1 https://github.com/ANGSD/angsd
git clone --depth=1 --recursive https://github.com/SAMtools/htslib
cd angsd; git tag -a ${VERSION} -m "time for version ${VERSION}"
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
cd ..
tar --exclude='.git' -cvf angsd${VERSION}.tar.gz angsd htslib/
scp angsd${VERSION}.tar.gz software@popgen.dk:/home/software/download/angsd/

Make a new github version to put on github

VERSION=0.935
cd angsd/
sed "s/PACKAGE_VERSION  = .*/PACKAGE_VERSION  = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
git commit Makefile -m "Preparing new ${VERSION} version"
git tag -a ${VERSION} -m "time for a new version ${VERSION}"
git push
git push --tags