ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
Thorfinn: Difference between revisions
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| Line 7: | Line 7: | ||
mkdir delme | mkdir delme | ||
cd delme | cd delme | ||
git clone https://github.com/ANGSD/angsd | git clone --depth=1 https://github.com/ANGSD/angsd | ||
git clone https://github.com/SAMtools/htslib | git clone --depth=1 https://github.com/SAMtools/htslib | ||
cd angsd; git tag -a ${VERSION} -m "time for a new version" | cd angsd; git tag -a ${VERSION} -m "time for a new version" | ||
sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp | sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp | ||
Revision as of 16:56, 28 January 2019
How to deploy
This page described how a new version should be put on wiki and github
Make a combined angsd htslib to put on wiki download
copy latest and make a new annotated tag and push to wiki
VERSION=0.922
mkdir delme
cd delme
git clone --depth=1 https://github.com/ANGSD/angsd
git clone --depth=1 https://github.com/SAMtools/htslib
cd angsd; git tag -a ${VERSION} -m "time for a new version"
sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
cd ..
tar --exclude='.git' -cvf angsd${VERSION}.tar.gz angsd htslib/
scp angsd${VERSION}.tar.gz software@popgen.dk:/home/software/download/angsd/
Make a new github version to put on github
VERSION=0.923
cd angsd/
sed "s/PACKAGE_VERSION = .*/PACKAGE_VERSION = ${VERSION}/" Makefile >tmp
diff Makefile tmp
mv tmp Makefile
git commit Makefile -m "Preparing new ${VERSION} version"
git tag -a ${VERSION} -m "time for a new version"
git push
git push --tags