User contributions for Albrecht

5 March 2014

• 18:5918:59, 5 March 2014 diff hist −29‎ Beagle input ‎ →‎Example
• 18:5818:58, 5 March 2014 diff hist +139‎ Beagle input ‎No edit summary
• 18:5418:54, 5 March 2014 diff hist −45‎ SNP calling ‎No edit summary

26 February 2014

• 20:0420:04, 26 February 2014 diff hist +11‎ SNP calling ‎No edit summary
• 18:4318:43, 26 February 2014 diff hist −43‎ Allele Frequencies ‎ →‎.mafs
• 18:4318:43, 26 February 2014 diff hist −1‎ Allele Frequencies ‎ →‎.mafs
• 18:4318:43, 26 February 2014 diff hist +8‎ Allele Frequencies ‎ →‎.mafs
• 18:4018:40, 26 February 2014 diff hist +105‎ Allele Frequencies ‎ →‎.mafs
• 18:3718:37, 26 February 2014 diff hist −606‎ Allele Frequencies ‎ →‎.mafs
• 18:3618:36, 26 February 2014 diff hist +44‎ Allele Frequencies ‎ →‎Allele Frequency estimation
• 18:3618:36, 26 February 2014 diff hist +974‎ N SYKmaf ‎ Created page with "==ML estimator with known minor== First infer the Major and Minor allele and then use BFGS (-doMaf 1) optimazation or the EM algorithm (..."
• 18:3518:35, 26 February 2014 diff hist +41‎ Allele Frequencies ‎ →‎Allele Frequency estimation
• 18:3518:35, 26 February 2014 diff hist −985‎ Allele Frequencies ‎ →‎Theory
• 18:3418:34, 26 February 2014 diff hist +64‎ Allele Frequencies ‎No edit summary
• 18:3218:32, 26 February 2014 diff hist +11‎ User:Thorfinn ‎No edit summary
• 18:3218:32, 26 February 2014 diff hist +867‎ User:Thorfinn ‎ →‎Anders changes to version 583
• 18:1318:13, 26 February 2014 diff hist +330‎ User:Thorfinn ‎No edit summary
• 17:4717:47, 26 February 2014 diff hist +57‎ Allele Frequencies ‎ →‎Example
• 17:4617:46, 26 February 2014 diff hist −19‎ Allele Frequencies ‎No edit summary
• 17:4517:45, 26 February 2014 diff hist −420‎ Allele Frequencies ‎No edit summary
• 17:4417:44, 26 February 2014 diff hist +395‎ N PostFreq ‎ Created page with "==Estimator from genotype probabilities== If the genotype probabilities are known the frequencies can be estimated by summing up the posterior probabilities <math> p(G=g|D)</..." current
• 17:4417:44, 26 February 2014 diff hist −93‎ Allele Frequencies ‎No edit summary
• 17:4117:41, 26 February 2014 diff hist +5‎ Allele Frequencies ‎ →‎Example
• 17:3917:39, 26 February 2014 diff hist +824‎ Allele Frequencies ‎No edit summary
• 17:2517:25, 26 February 2014 diff hist +254‎ Error estimation ‎No edit summary
• 17:2317:23, 26 February 2014 diff hist −75‎ Error estimation ‎ →‎Theory
• 17:2117:21, 26 February 2014 diff hist +15‎ Error estimation ‎ →‎Example
• 17:1917:19, 26 February 2014 diff hist +34‎ Error estimation ‎ →‎Options
• 17:1817:18, 26 February 2014 diff hist +15‎ Error estimation ‎ →‎Options
• 17:1617:16, 26 February 2014 diff hist +314‎ Error estimation ‎ →‎Error estimation using an outgroup and an error free individual
• 17:1517:15, 26 February 2014 diff hist +2,063‎ N ErrorPerfect ‎ Created page with "==Method 2== The method was use in Orlando2013 and is described in details in supplementary 4.4 The estimated rates can roughly be intrepreted as relative error rates. T..." current
• 17:1317:13, 26 February 2014 diff hist +28‎ Error estimation ‎ →‎Error estimation using an outgroup and an error free individual
• 17:1317:13, 26 February 2014 diff hist −2,065‎ Error estimation ‎ →‎Method 2
• 17:1217:12, 26 February 2014 diff hist −13‎ ErrorSykMethod ‎No edit summary current
• 17:1217:12, 26 February 2014 diff hist +854‎ N ErrorSykMethod ‎ Created page with "==Method 1== The method is described in kim2011 and work by simultaneously estimating allele frequencies, genotype likelihoods and the error rates. The likelihood of t..."
• 17:1217:12, 26 February 2014 diff hist +69‎ Error estimation ‎ →‎Error estimation from polymorphic sites
• 17:1117:11, 26 February 2014 diff hist −856‎ Error estimation ‎ →‎Method 1
• 17:0817:08, 26 February 2014 diff hist +48‎ Error estimation ‎ →‎Output
• 17:0217:02, 26 February 2014 diff hist 0‎ Error estimation ‎No edit summary
• 16:1716:17, 26 February 2014 diff hist +1‎ Error estimation ‎No edit summary
• 16:1616:16, 26 February 2014 diff hist +11‎ Error estimation ‎ →‎Example
• 16:1216:12, 26 February 2014 diff hist +280‎ Error estimation ‎No edit summary
• 16:0716:07, 26 February 2014 diff hist +16‎ Error estimation ‎No edit summary
• 15:3315:33, 26 February 2014 diff hist 0‎ Major Minor ‎No edit summary
• 15:2915:29, 26 February 2014 diff hist +503‎ Major Minor ‎No edit summary
• 15:2315:23, 26 February 2014 diff hist +256‎ Major Minor ‎ →‎Details
• 15:1915:19, 26 February 2014 diff hist −29‎ Major Minor ‎ →‎From counts of data
• 15:1915:19, 26 February 2014 diff hist −1‎ Major Minor ‎ →‎From genotype likelihood data
• 15:1515:15, 26 February 2014 diff hist +1,283‎ N MajorMinor Method ‎ Created page with "==From Genotype Likelihoods== Assuming that the considered site is diallelic, we infer those two alleles using the genotype likelihoods. Let <math>\{M,m\}</math> denote the tw..." current
• 15:1515:15, 26 February 2014 diff hist +52‎ Major Minor ‎ →‎From genotype likelihood data