ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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6 March 2014
- 12:2712:27, 6 March 2014 diff hist +148 SFS Estimation →Options
- 12:2612:26, 6 March 2014 diff hist +52 SFS Estimation →Posterior per-site distributions of the sample allele frequency
- 12:2312:23, 6 March 2014 diff hist +13 SFS Estimation →Interpretation of output file
- 12:2312:23, 6 March 2014 diff hist +47 SFS Estimation →Interpretation of output file
- 12:2012:20, 6 March 2014 diff hist −3 SFS Estimation →Example
- 12:2012:20, 6 March 2014 diff hist +155 SFS Estimation →Example
- 12:1812:18, 6 March 2014 diff hist +188 SFS Estimation →Brief Overview
- 12:1712:17, 6 March 2014 diff hist −64 SFS Estimation →Example
- 12:1612:16, 6 March 2014 diff hist +98 SFS Estimation →Example
- 12:1512:15, 6 March 2014 diff hist −1 SFS Estimation →Example
- 12:1112:11, 6 March 2014 diff hist +1 SFS Estimation →How to plot
- 12:1012:10, 6 March 2014 diff hist +43 SFS Estimation →How to plot
- 12:0912:09, 6 March 2014 diff hist −2,070 SFS Estimation →Theory
- 12:0912:09, 6 March 2014 diff hist −11 RealSFSmethod →Theory
- 12:0812:08, 6 March 2014 diff hist +2,068 N RealSFSmethod Created page with "=Theory= <pre> We will try to elaborate on the theory behind the methods. Below is only a preliminary version of the theory. </pre> This method is described in Nielsen2012..."
- 12:0812:08, 6 March 2014 diff hist +6 SFS Estimation No edit summary
- 12:0812:08, 6 March 2014 diff hist +2 SFS Estimation No edit summary
- 12:0812:08, 6 March 2014 diff hist +64 SFS Estimation No edit summary
- 12:0612:06, 6 March 2014 diff hist +161 SFS Estimation →Options
- 12:0312:03, 6 March 2014 diff hist +67 SFS Estimation No edit summary
- 11:5311:53, 6 March 2014 diff hist −9 Thetas,Tajima,Neutrality tests →Example
- 11:5211:52, 6 March 2014 diff hist −9 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5211:52, 6 March 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5111:51, 6 March 2014 diff hist +4 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:5011:50, 6 March 2014 diff hist −4 Thetas,Tajima,Neutrality tests →Example
- 11:5011:50, 6 March 2014 diff hist +16 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4611:46, 6 March 2014 diff hist +26 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4411:44, 6 March 2014 diff hist +170 Thetas,Tajima,Neutrality tests →Unknown ancestral state (folded sfs)
- 11:4011:40, 6 March 2014 diff hist +33 Thetas,Tajima,Neutrality tests →Sliding Window example
- 11:3811:38, 6 March 2014 diff hist +129 Thetas,Tajima,Neutrality tests →.thetas.gz is
- 11:3711:37, 6 March 2014 diff hist +67 Thetas,Tajima,Neutrality tests →Example
- 11:3611:36, 6 March 2014 diff hist −18 Thetas,Tajima,Neutrality tests →Sliding Window example
- 11:2711:27, 6 March 2014 diff hist +1 Thetas,Tajima,Neutrality tests →Example
- 11:2511:25, 6 March 2014 diff hist +72 Thetas,Tajima,Neutrality tests →Example
- 11:0911:09, 6 March 2014 diff hist +39 Thetas,Tajima,Neutrality tests →Example
5 March 2014
- 20:1520:15, 5 March 2014 diff hist +1 Filters →Extra
- 20:1420:14, 5 March 2014 diff hist +16 Plink →Example
- 20:1220:12, 5 March 2014 diff hist −11 Filters →Extra
- 20:1220:12, 5 March 2014 diff hist −2 Plink →Example
- 20:0920:09, 5 March 2014 diff hist 0 Plink No edit summary
- 20:0820:08, 5 March 2014 diff hist 0 Plink →Example
- 20:0120:01, 5 March 2014 diff hist −5 Plink No edit summary
- 20:0020:00, 5 March 2014 diff hist +38 MediaWiki:Sidebar No edit summary
- 19:3819:38, 5 March 2014 diff hist +29 Association →Example with imputation (using BEAGLE)
- 19:3619:36, 5 March 2014 diff hist +556 Association →Example with imputation (using BEAGLE)
- 19:3519:35, 5 March 2014 diff hist +279 Input →Genotype Probability Files
- 19:1819:18, 5 March 2014 diff hist −998 Bugs No edit summary
- 19:1019:10, 5 March 2014 diff hist +418 Association →Example
- 19:0619:06, 5 March 2014 diff hist −39 MediaWiki:Sidebar No edit summary
- 19:0519:05, 5 March 2014 diff hist +405 Beagle input →output