ANGSD: Analysis of next generation Sequencing Data
Latest tar.gz version is (0.938/0.939 on github), see Change_log for changes, and download it here.
User contributions for Albrecht
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24 January 2017
- 13:1813:18, 24 January 2017 diff hist +1 PCA MDS No edit summary
- 13:1713:17, 24 January 2017 diff hist +26 PCA MDS No edit summary
16 November 2016
- 17:2017:20, 16 November 2016 diff hist +199 Fasta No edit summary
- 17:1917:19, 16 November 2016 diff hist +702 Fasta →Options
- 17:1317:13, 16 November 2016 diff hist +126 Fasta →Brief Overview
14 July 2016
- 15:4615:46, 14 July 2016 diff hist +3 Relatedness →IBS/genotype distribution
- 10:1610:16, 14 July 2016 diff hist +881 Genotype Distribution →Example current
- 10:0210:02, 14 July 2016 diff hist +6,368 Genotype Distribution No edit summary
- 09:4709:47, 14 July 2016 diff hist +94 Genotype Distribution No edit summary
- 09:4309:43, 14 July 2016 diff hist +946 Genotype Distribution No edit summary
- 09:3809:38, 14 July 2016 diff hist +4,100 Genotype Distribution No edit summary
12 July 2016
- 15:2815:28, 12 July 2016 diff hist 0 N File:RatioRel.png No edit summary current
- 15:2815:28, 12 July 2016 diff hist +41 Relatedness →IBS/genotype distribution
- 15:0215:02, 12 July 2016 diff hist +141 Relatedness →IBS/genotype distribution
- 14:5814:58, 12 July 2016 diff hist +302 Relatedness →How to get the IBS pattern
- 14:5514:55, 12 July 2016 diff hist +2 Relatedness No edit summary
- 14:5514:55, 12 July 2016 diff hist +12 N Genotype Distribution Created page with "comming soon"
- 14:5314:53, 12 July 2016 diff hist +299 Relatedness →IBS/genotype distribution
- 14:4714:47, 12 July 2016 diff hist +18 Relatedness No edit summary
- 14:4614:46, 12 July 2016 diff hist +60 Relatedness →IBS/genotype distribution
- 14:4314:43, 12 July 2016 diff hist +126 Relatedness →IBS/genotype distribution
- 14:3014:30, 12 July 2016 diff hist +243 Relatedness No edit summary
- 14:2214:22, 12 July 2016 diff hist +1,185 Relatedness No edit summary
- 14:0614:06, 12 July 2016 diff hist +2 Relatedness →IBS/genotype distribution
- 14:0514:05, 12 July 2016 diff hist +271 Relatedness →IBS/genotype distribution
- 14:0214:02, 12 July 2016 diff hist +87 Relatedness →NGSrelate - estimation of IBD probabilities
- 14:0114:01, 12 July 2016 diff hist −3 Relatedness →IBS/genotype distribution
- 13:5513:55, 12 July 2016 diff hist +444 Relatedness No edit summary
- 13:5313:53, 12 July 2016 diff hist +746 Relatedness No edit summary
- 13:2513:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 13:2513:25, 12 July 2016 diff hist +4 Relatedness No edit summary
- 13:2513:25, 12 July 2016 diff hist +703 N Relatedness Created page with " * NGSrelate - estimation of kinship coefficients In order to estimate kinship coefficient then population allele frequencies are needed. These can be estimated from data if ..."
- 13:2013:20, 12 July 2016 diff hist +2 MediaWiki:Sidebar No edit summary
- 13:1913:19, 12 July 2016 diff hist +88 MediaWiki:Sidebar No edit summary
7 June 2016
- 16:3316:33, 7 June 2016 diff hist 0 PCA MDS →sampled bases *ibs.gz
31 May 2016
- 13:3113:31, 31 May 2016 diff hist +30 PCA MDS No edit summary
- 12:4712:47, 31 May 2016 diff hist 0 PCA MDS No edit summary
- 12:4612:46, 31 May 2016 diff hist +222 PCA MDS →MDS/PCA using R
16 May 2016
- 12:2112:21, 16 May 2016 diff hist +8 PCA MDS →IBS
- 12:2012:20, 16 May 2016 diff hist +90 PCA MDS →Covariance
- 11:0711:07, 16 May 2016 diff hist 0 PCA MDS →Options
13 May 2016
- 12:3612:36, 13 May 2016 diff hist +188 PCA No edit summary
11 May 2016
- 09:3209:32, 11 May 2016 diff hist −95 PCA MDS →samples base *.ibsMat
28 April 2016
- 10:1610:16, 28 April 2016 diff hist +93 Genotype Likelihoods →SYK (Kim et al.)
- 10:1310:13, 28 April 2016 diff hist +11 Genotype Likelihoods →SYK (Kim et al.)
27 April 2016
- 17:5317:53, 27 April 2016 diff hist +2 PCA MDS →Output
- 17:5217:52, 27 April 2016 diff hist +6 PCA MDS →MDS/PCA using R
- 17:5117:51, 27 April 2016 diff hist 0 N File:PCA MDS.png No edit summary current
- 17:5117:51, 27 April 2016 diff hist 0 PCA MDS →MDS/PCA using R
- 17:4917:49, 27 April 2016 diff hist 0 File:IBD PCA.pdf Albrecht uploaded a new version of "File:IBD PCA.pdf" current